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Norman Paton

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Norman Paton: Publications

The following is a reasonably complete publication list since 1995; if you would like a copy of a paper for which the pdf is not provided, please send me an email. For details of who has cited these, I have a Google Scholar User Profile.

2017

Azuan, N.A., Embury, S.M., Paton, N.W., Observing the Data Scientist: Using Manual Corrections As Implicit Feedback. HILDA@SIGMOD, 13:1-13:6, 2017.

Bogatu, A., Paton, N.W., Fernandes, A.A.A., Towards Automatic Data Format Transformations: Data Wrangling at Scale. Proc. 31st British International Conference on Databases, Springer, 36-48, 2017.

Crescenzi, V., Fernandes, A.A.A., Merialdo, P., Paton, N.W., Crowdsourcing for data management, Knowl Inf Syst, 53(1--41), 2017. (open access)

Higginson, A., Paton, N.W., Embury, S.M., Bostock, C., DBaaS Cloud Capacity Planning -- Accounting for Dynamic RDBMS System that Employ Clustering and Standby Architectures. Proc. of the 20th International Conference on Extending Database Technology (EDBT 2017), 687-698, 2017. (open access)

Konstantinou, N., Koehler, M., Abel, E., Civili, C., Neumayr, B., Sallinger, E., Fernandes, A.A.A., Gottlob, G., Keane, J.A., Libkin, L., Paton, N.W., The VADA Architecture for Cost-Effective Data Wrangling. SIGMOD Conference, 1599-1602, 2017. (pdf) (screencast).

Rios, J.C.C., Paton, N.W., Fernandes, A.A.A., Abel, E., Keane, J.A., Targeted Feedback Collection Applied to Multi-Criteria Source Selection. 21st European Conference Advances in Databases and Information Systems, 136-150, Springer, 2017.

2016

Alshukaili, D., Fernandes, A.A., Paton, N.W., Structuring Linked Data Search Results Using Probabilistic Soft Logic. 15th International Semantic Web Conference (1), Springer, 3-19, 2016.

Furche, T., Gottlob, G., Libkin, L., Orsi, G., Paton, N.W., Data Wrangling for Big Data: Challenges and Opportunities. Proc. 19th International Conference on Extending Database Technology (EDBT), 473-478, 2016. (pdf)

Hummaida, A.R., Paton, N.W., Sakellariou, R., Adaptation in cloud resource configuration: a survey, Journal of Cloud Computing, Springer, 5:7, 2016. (open access)

Mosa, A., Paton, N.W., Optimizing virtual machine placement for energy and SLA in clouds using utility functions, Journal of Cloud Computing, Springer, 5:17, 2016. (open access)

Maskat, R., Paton, N.W., Embury, S.M., Pay-as-you-go Configuration of Entity Resolution. Large-Scale Data- and Knowledge-Centered Systems, 29, 40-65, 2016 (pdf).

Paton, N.W., Belhajjame, K., Embury, S.M., Fernandes, A.A.A., Maskat, R., Pay-as-you-go Data Integration: Experiences and Recurring Themes. Proc, 42nd International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM), Springer, 81-92, 2016 (pdf).

Ríos, J.C.C., Paton, N.W., Fernandes, A.A.A., Belhajjame, K., Efficient Feedback Collection for Pay-as-you-go Source Selection. Proceedings of the 28th International Conference on Scientific and Statistical Database Management (SSDBM), 1:1-1:12, 2016.

2015

Belhajjame, K., Paton, N.W., Hedeler, C., Fernandes, A.A.A., Enabling community-driven information integration through clustering. Distributed and Parallel Databases, 33(1): 33-67, 2015. (open access)

Christodoulou, K., Paton, N.W., Fernandes, A.A.A., Structure Inference for Linked Data Sources Using Clustering. T. Large-Scale Data- and Knowledge-Centered Systems, 19: 1-25, 2015.

Christodoulou, K., Fernandes, A.A.A., Paton, N.W., Combining Syntactic and Semantic Evidence for Improving Matching over Linked Data Sources. Web Information Systems Engineering, WISE (1), 200-215, Springer, 2015.

Alshukaili, D., Fernandes, A.A., Paton, N.W., Interpreting Linked Data Search Results Using Markov Logic. 5th International Workshop on Linked Web Data Management, EDBT/ICDT Workshops, CEUR-WS, 221-228, 2015. (open access)

2014

Belhajjame, K., Embury, S.M., Paton N.W., Verification of Semantic Web Service Annotations Using Ontology-Based Partitioning, IEEE Transactions on Services Computing, 7(3): 515-528, 2014. (pdf)

Galpin, I., Stokes, A.B., Valkanas, G., Gray, A.J.G., Paton, N.W., Fernandes, A.A.A., Sattler K-U, Gunopulos, G., SensorBench: benchmarking approaches to processing wireless sensor network data. Conference on Scientific and Statistical Database Management (SSDBM) , Paper 21, ACM Press, 2014.

Stokes, A.B., Paton, N.W., Fernandes, A.A.A., Proactive adaptations in sensor network query processing. Conference on Scientific and Statistical Database Management (SSDBM) , Paper 23, ACM Press, 2014.

2013

Belhajjame, K., Paton, N.W., Embury, S.M., Fernandes, A.A.A., Hedeler, C., Incrementally improving dataspaces based on user feedback, Information Systems , Vol. 38, No 5, 656-687, 2013 (pdf).

Christodoulou, K., Paton, N.W., Fernandes, A.A.A., Structure inference for linked data sources using clustering. Third International Workshop on Linked Web Data Management, EDBT/ICDT Workshops Proceedings, ACM Press, 60-67, 2013. (pdf).

Galpen, I., Fernandes, A.A.A., Paton, N.W., QoS-aware optimization of sensor network queries, VLDB Journal, Vol 22, No 4, 495-517, 2013 (pdf).

Guo, C., Hedeler, C., Paton, N.W., Fernandes, A.A.A., EvoMatch: An Evolutionary Algorithm for Inferring Schematic Correspondences. T. Large-Scale Data- and Knowledge-Centered Systems, Vol 12, 1-26, 2013.

Guo, C., Hedeler, C., Paton, N.W., Fernandes, A.A.A., MatchBench: Benchmarking Schema Matching Algorithms for Schematic Correspondences. Proc. 29th British National Conference on Databases, 92-106, Springer, 2013.

Hedeler, C., Fernandes, A.A.A., Belhajjame, K., Mao, L., Guo, C., Paton, N.W., Embury , S.M., A Functional Model for Dataspace Management Systems, Advanced Query Processing, Intelligent Systems Reference Library Volume 36, B. Catania, L. C. Jain (eds), 305-341, Springer, 2013.

Osorno-Gutierrez, F., Paton, N.W., Fernandes, A.A.A., Crowdsourcing Feedback for Pay-As-You-Go Data Integration. DBCrowd: First VLDB Workshop on Databases and Crowdsourcing, 32-37, CEUR, 2013 (online).

Paton, N.W., Guerrini, G., Catana, B., Castellanos, M., Atzeni, P., Fraternali, P., Gounaris, A., Joint 2013 EDBT/ICDT Conferences, EDBT '13 Proceedings, Genoa, Italy, March 18-22, 2013. ACM 2013. (online)

Smallbone, K., Messiha, H.L., Carroll, K.M., Winder, C.L., Malys, N., Dunn, W.B., Murabito, E., Swainston, N., Dada, J.O., Khan, F., Pir, P., Simeonidis, E., Spasic, I., Wishart, G., Weichart, D., Hayes, N.W., Jameson, D., Broomhead, D.S., Oliver, S.G., Gaskell, S.J., McCarthy, J.E.G., Paton, N.W., Westerhoff, H.V., Kell, D.B., Mendes, P., A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes, FEBS Letters, Volume 587, Issue 17 , 2832-2841, 2013. (online)

Stokes, A.B., Fernandes, A.A.A., Paton, N.W., Adapting to Node Failure in Sensor Network Query Processing. Proc. 29th British National Conference on Databases, 33-47, Springer, 2013.

Valkanas, G., Galpin, I., Gray, A.G.J., Fernandes, A.A.A., Paton, N.W. and Gunopulos, D., Declarative In-Network Sensor Data Analysis, PECML/PKDD 2013 Workshop: Languages for Data Mining and Machine Learning, 2013.

2012

Gounaris, A., Yfoulis, C.A., Paton, N.W., Efficient Load Balancing in Partitioned Queries Under Random Perturbations, ACM Transactions on Autonomous and Adaptive Systems, Vol. 7, No. 1, Article 5, 2012 (pdf).

Hedeler, C., Belhajjame, K., Mao, L., Guo, C., Arundale, I., Farias Lóscio, B., Paton, N.W. Fernandes, A.A.A., Embury, S.M., DSToolkit: An Architecture for Flexible Dataspace Management. T. Large-Scale Data- and Knowledge-Centered Systems 5: 126-157, 2012 (pdf).

Maskat, R., Paton, N.W., Embury, S.M., Pay-as-You-Go Ranking of Schema Mappings Using Query Logs. Proc. 8th Intl. Conf. on Data Integration in the Life Sciences (DILS), 37-52, Springer, 2012.

Paton, N.W., de Aragão, M.A.T., Fernandes, A.A.A., Utility-driven adaptive query workload execution, Future Generation Computer Systems , 28(7), 1070-1079, 2012 (pdf).

Paton, N.W., Christodoulou, K., Fernandes, A.A.A., Parsia, B., Hedeler , C., Pay-as-you-go data integration for linked data: opportunities, challenges and architectures, Proc. of the 4th International Workshop on Semantic Web Information Management (SWIM), Article No 3, ACM Digital Library, 2012 (pdf).

Stokes, A.B., Fernandes, A.A.A., Paton , N.W., Resilient sensor network query processing using logical overlays, Proc. of the 11th ACM International Workshop on Data Engineering for Wireless and Mobile Access (MobiDE), 45-52, ACM, 2012 (pdf).

2011

Belhajjame, K., Paton, N.W., Fernandes, A.A.A., Hedeler, C., Embury, S.M., User Feedback as a First Class Citizen in Information Integration Systems, Proc. 5th Biennial Conference on Innovative Data Systems Research (CIDR), 175-183, 2011 (pdf).

Braga, D., Grossniklaus, M., Paton, N.W., Run-time Adaptivity for Search Computing, Search Computing: Trends and Developments, S. Ceri and M. Brambilla (eds), Springer, 141-155, 2011.

Galpin, I., Brenninkmeijer, C.Y.A., Gray, A. J. G., Jabeen, F., Fernandes, A.A.A., Paton, N.W., SNEE: a query processor for wireless sensor networks. Distributed and Parallel Databases, 29(1-2), 31-85, 2011. (pdf).

Galpin, I., Taylor, R., Gray, A.J.G., Brenninkmeijer, C.Y.A., Fernandes, A.A.A., Paton, N.W., Executing In-network Queries Using SNEE. Proc. 28th British National Conference on Databases, Springer, 136-139, 2011.

Gray, A.J.G., Garcia-Castro, R., Kyzirakos, K., Karpathiotakis, M., Calbimonte, J-P., Page, K., Sadler, J., Frazer, A., Galpin, I., Fernandes, A.A.A., Paton, N.W., Corcho, O., Koubarakis, M., De Roure, D., Martinez, K., Gomez-Perez, A., A Semantically Enabled Service Architecture for Mashups over Streaming and Stored Data, Proc. 8th Extending Semantic Web Conference, Springer, 300-314, 2011.

Gray, A.J.G., Sadler, J., Kit, O., Kyzirakos, K., Karpathiotakis, M., Calbimonte, J-P., Page, K., García-Castro, R., Frazer, A., Galpin, I., Fernandes, A.A.A., Paton, N.W., Corcho, O., Koubarakis, M., De Roure, D., Martinez, K. and Gómez-Pérez, A., A Semantic Sensor Web for Environmental Decision Support Applications, Sensors 11(9), 8855-8887, 2011 (pdf).

Hedeler, C., Belhajjame, K., Paton, N.W., Fernandes, A.A.A., Embury, S.M., Mao, L., Guo, C., Pay-As-You-Go Mapping Selection in Dataspaces, Proc. ACM SIGMOD, 1279-1283, 2011. (pdf).

Hedeler, C., Paton, N.W., Utilising the MISM Model Independent Schema Management Platform for Query Evaluation, Proc. 28th British National Conference on Databases, Springer, 108-117, 2011.

Lee, K., Paton, N.W., Sakellariou, R., Fernandes, A.A.A., Utility Functions for Adaptively Executing Concurrent Workflows, Concurrency and Computation: Practice and Experience, 23(6), 646-666, 2011. (pdf).

Missier, P., Paton, N.W., Li, P., Workflows for Information Integration in the Life Sciences, Search Computing: Trends and Developments, S. Ceri and M. Brambilla (eds), Springer, 215-226, 2011.

Swainston, N., Smallbone, K., Mendes, P., Kell, D., Paton, N., The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integr. Bioinform. Nov 18;8(2):186, 2011. (pdf).

Valkanas, G., Kotsifakos, A., Gunopulos, D., Galpin, I., Gray, A.J.G., Fernandes, A.A.A., Paton, N.W., Deploying In-Network Data Analysis Techniques in Sensor Networks. 12th IEEE International Conference on Mobile Data Management, IEEE Press, 341-344, 2011.

2010

Belhajjame, K., Paton, N.W., Embury, S.M., Fernandes, A.A.A., Hedeler, C., Feedback-based annotation, selection and refinement of schema mappings for dataspaces. Proc. 13th International Conference on Extending Database Technology (EDBT) , 573-584, ACM, 2010 (pdf).

Dada, J.O., Spasic, I., Paton, N.W., Mendes, P., SBRML: a markup language for associating systems biology data with models, Bioinformatics, Vol 26, No 7, 932-938, 2010.

Eurviriyanukul, K., Paton, N.W., Fernandes, A.A.A., Lynden, S.J., Adaptive join processing in pipelined plans. Proc. 13th International Conference on Extending Database Technology (EDBT) , 183-194, ACM, 2010 (pdf).

Gibson F., Hoogland C., Martinez-Bartolomé S., Medina-Aunon J.A., Albar J.P., Babnigg G., Wipat A., Hermjakob H., Almeida J.S., Stanislaus R., Paton N.W., Jones A.R., The Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative, Proteomics, Vol 10, No 17, 3073-3081, 2010.

Hedeler, C., Belhajjame, K., Paton, N.W., Campi, A., Fernandes, A.A.A. and Embury, S.M., Dataspaces, Search Computing: Challenges and Directions, S. Ceri, M. Brambilla (eds), Springer, 114-134, 2010.

Hedeler, C., Belhajjame, K., Mao, L., Paton, N.W., Fernandes, A.A.A., Guo, C., Embury, S.M., Flexible Dataspace Management Through Model Management, Proc. of the 2010 EDBT/ICDT Workshops, ACM Conference Proceeding Series; Vol. 426, 2010. (pdf)

Jones, A.R., Carroll, K., Knight, D., MacLellan, K., Domann, P.J., Legido-Quigley, C., Huang, L., Smallshaw, L., Mirzaei, H., Shofstahl, J., Paton, N.W., Guidelines for reporting the use of column chromatography in proteomics, Nature Biotech., Vol 28, No 7, 654, 2010.

Li P., Dada, J.O., Jameson, D., Spasic, I., Swainston, N., Carroll K., Dunn, W., Khan, F., Malys, N., Messiha, H.L., Simeonidis, E., Weichart, D., Winder, C., Wishart, J., Broomhead, D., Goble, C.A., Gaskell, S.J., Kell, D. B., Westerhoff, H.V., Mendes, D., Paton, N.W., Systematic integration of experimental data and models in systems biology, BMC Bioinformatics, Vol 11, No 582, 2010 (online).

Masseroli, M., Paton, N.W., Spasic, I., Search Computing and the Life Sciences, Search Computing: Challenges and Directions, S. Ceri, M. Brambilla (eds), Springer, 291-306, 2010.

Missier, P., Paton, N.W., Belhajjame, K., Fine-grained and efficient lineage querying of collection-based workflow provenance. Proc. 13th International Conference on Extending Database Technology (EDBT) , 299-310, ACM, 2010 (pdf).

Swainston, N., Jameson, D., Li, P., Spasic, I., Mendes, P., Paton, N.W., Integrative Information Management for Systems Biology. Proc. 7th Intl. Conf. on Data Integration in the Life Sciences (DILS), Springer, 164-178, 2010.

Swainston N., Golebiewski M., Messiha H.L., Malys N., Kania R., Kengne S., Krebs O., Mir S., Sauer-Danzwith H., Smallbone K., Weidemann A., Wittig U., Kell D.B., Mendes P., Müller W., Paton N.W., Rojas I., Enzyme kinetics informatics: from instrument to browser. FEBS J., 11(1):582, 2010.

2009

Brenninkmeijer, C.Y.A., Galpin, I., Fernandes, A.A.A., Paton, N.W., Validated cost models for sensor network queries. Proc. of the 6th Workshop on Data Management for Sensor Networks, ACM International Conference Proceeding Series, 2009 (pdf).

Galpin, I., Brenninkmeijer, C.Y.A., Jabeen, F., Fernandes, A.A.A. and Paton, N.W., Comprehensive Optimization of Declarative Sensor Network Queries. Proc. 21st Intl. Conf on Scientific and Statistical Database Management, 339-360, Springer-Verlag, 2009 (pdf).

Gounaris, A., Smith, J., Paton, N.W., Sakellariou, R., Fernandes, A.A.A. and Watson, P., Adaptive workload allocation in query processing in autonomous heterogeneous environments, Distributed and Parallel Databases, Vol 25, 125-164, 2009 (pdf).

Gounaris, A., Yfoulis, C.A., and Paton, N.W., An Efficient Load Balancing LQR controller in Parallel Database Queries under Random Perturbations. 18th IEEE International Conference on Control Applications, Part of 2009 IEEE Multi-conference on Systems and Control (MSC), 794-799, 2009 (pdf).

Hedeler, C., Belhajjame, K., Paton, N.W., Fernandes, A.A.A. and Embury, S.M., Dimensions of Dataspaces,Proc. 26th British National Conference on Databases, Springer-Verlag, 55-66, 2009 (pdf).

Jameson, D., Turner, D.A., Ankers, J., Kennedy, S., Ryan, S., Swainston, N., Griffiths, T., Spiller, D.G., Oliver, S.G., White, M.R.H., Kell, D.B., Paton, N.W., Information management for high content live cell imaging, BMC Bioinformatics, 10:226, 2009 (online).

Jones, A.R., Siepen, J.A., Hubbard, S.J., Paton, N.W., Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines, Proteomics , 9(5), 1220-1229, 2009 (online).

Jones, A.R., Lister, A.L., Hermida, L., Wilkinson, P., Eisenacher, M., Belhajjame, K., Gibson, F., Lord, P., Pocock, M., Rosenfelder, J., Santoyo-Lopez, J., Wipat, A., Paton, N.W., Modeling and Managing Experimental Data Using FuGE, OMICS: A Journal of Integrative Biology, 13(3): 239-251, 2009 (pdf).

Lee, K., Paton, N.W., Sakellariou, R., Fernandes, A.A.A., Utility Driven Adaptive Workflow Execution, Proceedings of the 9th IEEE International Symposium on Cluster Computing and the Grid (CCGRID), May 18-21, Shanghai, China, pages 220-227, 2009 (pdf).

Lee, K., Paton, N.W., Sakellariou, R., Deelman, E., Fernandes, A.A.A., Mehta, G., Adaptive Workflow Processing and Execution in Pegasus, Concurrency and Computation: Practice and Experience, Vol 21, 1965-1981, 2009.

Lynden, S., Mukherjee, A., Hulme, A.C., Fernandes, A.A.A., Paton, N.W., Sakellariou, R., Watson, P., The Design and Implementation of OGSA-DQP: A service-based distributed query processor, Future Generation Computer Systems, 25: 224-236, 2009 (pdf).

Mao, L., Belhajjame, K., Paton, N.W., Fernandes, A.A.A., Defining and Using Schematic Correspondances for Automatically Generating Schema Mappings, Proc. 21st Intl. Conference on Advanced Information Systems (CAiSE), Springer-Verlag, 79-93, 2009 (pdf).

Paton, N.W., Buenabad-Chavez, J., Chen, M., Raman, V., Swart, G., Narang, I., Yellin, D.M., Fernandes, A.A.A., Autonomic Query Parallelization using Non-dedicated Computers: An Evaluation of Adaptivity Options, VLDB Journal, 18: 119-140, 2009 (pdf).

Paton, N.W., de Aragao, M.A.T., Lee, K., Fernandes, A.A.A., Sakellariou, R., Optimizing Utility in Cloud Computing through Autonomic Workload Execution, IEEE Data Engineering Bulletin, 32(1), 51-58, 2009 (pdf).

Paton, N.W., Missier, P., Hedeler, C. (eds), Proceedings of the 6th International Workshop on Data Integration in the Life Sciences, Springer Verlag, 2009 (online).

Spasic,I., Simeonidis, E., Messiha, H.L., Paton, N.W., and Kell, D.B., KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways, Bioinformatics, 25: 1494-1411, 2009 (online).

2008

Belhajjame, K., Jones, A.R. and Paton, N.W., A toolkit for capturing and sharing FuGE experiments, Bioinformatics, 24: 2647 - 2649, 2008 (online).

Belhajjame, K., Embury, S.M., Paton, N.W., Stevens, R., Goble, C.A., Automatic annotation of Web services based on workflow definitions. ACM Transactions on the Web (TWEB) , 2(2), Article 11, 2008 (pdf).

Brenninkmeijer, C.Y.A., Galpin, J., Fernandes, A.A.A., Paton, N.W., A Semantics for a Query Language over Sensors, Streams and Relations. Proc. 25th British National Conference on Databases, 87-99, Gray, W.A., Jeffrey, K.G. and Shao, J. (eds), Springer, 2008 (pdf).

Galpin, I., Brenninkmeijer, C.Y.A., Jabeen, F., Fernandes, A.A.A., Paton, N.W., An Architecture for Query Optimization in Sensor Networks. Proc. 24th Intl. Conference on Data Engineering (ICDE), IEEE Press, 1439-1441, 2008 (pdf).

Gibson, F., Anderson, L., Babnigg, G., Baker, M., Berth, M., Binz, P-a., Borthwick, A., Cash, P., Day, B.W., Friedman, D.B., Garland, D., Gutstein, H.B., Hoogland, C., Jones, N.A., Khan, A., Klose, J., Lamond, A.I., Lemkin, P.M., Lilley, K.S., Minden, J., Morris, N.J., Paton, N.W., Pisano, M.R., Prime, J.E., Rabilloud, T., Stead, D.A., Taylor, C.F., Voshol, H., Wipat A., Jones, A.R., Guidelines for reporting the use of gel electrophoresis in proteomics, Nature Biotech., 26(8), 860-861, 2008 (online).

Hedeler, C., Paton, N.W., A Comparative Evaluation of XML Difference Algorithms with Genomic Data, Proc. 20th Intl. Conf, on Scientific and Statistical Database Management, B Ludascher and N. Mamoulis (eds), Springer, 258-275, 2008 (pdf).

Jameson, D., Garwood, K., Garwood, C., Booth, T., Alper, P., Oliver, S.G., Paton, N.W., Data capture in bioinformatics: requirements and experiences with Pedro, BMC Bioinformatics, 9:183, 2008 (pdf).

Lee, K., Paton, N.W., Sakellariou, R., Deelman, E., Fernandes, A.A.A., Mehta, G., Adaptive Workflow Processing and Execution in Pegasus, 3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08), in Proceedings of the Third International Conference on Grid and Pervasive Computing Symposia/Workshops, IEEE Press, Pages 99-106, 2008 (pdf).

Paton, N.W., Managing and sharing experimental data: standards, tools and pitfalls, Biochemical Society Transactions, Vol 36, No 1, 33-36, 2008.

Paton, N.W., Data Integration in the Life Sciences: Fun, Findings and Frustrations. Proc. 5th Intl. Workshop on Data Integration in the Life Sciences, Springer, 8-10, 2008 (pdf).

Paton, N.W., Autonomics and Data Management, Concurrency and Computation: Practice and Experience, Vol 20, 2075-2088, 2008.

Siepen, J.A., Belhajjame, K., Selley, J.N., Embury, S.M., Paton, N.W., Goble, C.A., Oliver, S.G., Stevens, R., Zamboulis, L., Martin, N., Poulovassillis, A., Jones, P., Cote, R., Hermjakob, H., Pentony, M.M., Jones, D.T., Orengo, C.A., Hubbard, S.J., ISPIDER Central: an integrated database web-server for proteomics, Nucleic Acids Research, Vol 36, Web Server Issue W485-W490, 2008 (online).

Soanes, D.A., Alam, I., Cornell, M., Wong, H.M., Hedeler, C., Paton, N.W., Rattray, M., Hubbard, S.J., Oliver, S.G., Talbot, N.J., Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis, PLos ONE, Vol 3, Issue 6, e2300, 2008 (online).

Spasic, I., Schober, D., Sansone, S-A., Rebholz-Schuhmann, D., Kell, D.B. and Paton, N.W., Facilitating the development of controlled vocabularies for metabolomics technologies with text mining, BMC Bioinformatics, 9(Suppl 5):S5, 2008 (pdf).

Stead, D., Paton, N.W., Missier, P., Embury, S.M., Hedeler, C., Jin, B., Brown, A.J.P., Preece, A.D., Information quality in proteomics. Briefings in Bioinformatics, 9(2): 174-188, 2008.

Yellin, D.M., Buenabad Chávez, J., Paton, N.W., Probabilistic adaptive load balancing for parallel queries. ICDE Workshops (3rd Intl. Workshop on Self-Managing Database Systems), IEEE Press, 19-26, 2008 (pdf).

2007

Alam, I., Cornell, M., Soanes, D.M., Hedeler, C., Wong, H.M., Rattray, R., Hubbard, S.J., Talbot, N.J., Oliver, S.G., Paton, N.W., A Methodology for Comparative Functional Genomics, Journal of Integrative Bioinformatics , 4(3), 2007 (online).

Castrillo J.I., Zeef L.A., Hoyle D.C., Zhang N., Hayes A., Gardner D.C., Cornell M.J., Petty J., Hakes L., Wardleworth L., Rash B., Brown M., Dunn W.B., Broadhurst D., O donoghue K., Hester S.S., Dunkley T.P., Hart S.R., Swainston N., Li P., Gaskell S.J., Paton N.W., Lilley K.S., Kell D.B., Oliver S.G., Growth control of the eukaryote cell: A systems biology study in yeast, J Biol, 6(1):4, 2007 (online).

Cornell M.J., Alam, I., Soanes, D.N., Wong, H.M., Hedeler, C., Paton, N.W., Rattray, M., Hubbard, S.J., Talbot, N.J., Oliver, S.G., Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi, Genome Research, 17, 1809-1822, 2007(online).

Hedeler, C., Wong, H.M., Cornell, M.J., Alam, I., Soanes, D.M., Rattray, M., Hubbard, S.J., Talbot, N.J., Oliver, S.G., Paton, N.W., e-Fungi: a data resource for comparative analysis of fungal genomes, BMC Genomics, 8:426, 2007 (online).

Jones, A.R., Miller, M., Aebersold, R., Apweiler, R., Ball, C.A., Brazma, A., DeGreef, J., Hardy, N., Hermjakob, H., Hubbard, S.J., Hussey, P., Igra, M., Jenkins, H., Julian, R.K. Jr, Laursen, K., Oliver, S.G., Paton, N.W., Sansone, S-A, Sarkans, U., Stoeckert, C.J. Jr, Taylor, C.F., Whetzel, P.L., White, J.A., Spellman, P. and Pizarro, A., The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics, Nature Biotech , October;25(10), 1127-1133, 2007 (online) .

Lee, K., Sakellariou, R., Paton, N.W. and Fernandes, A.A.A., Workflow Adaptation as an Autonomic Computing Problem, 2nd Workshop on Workflows in Support of Large-Scale Science (WORKS 07), Proceedings of HPDC & Co-Located Workshops, pages 29-34, ACM Press, 2007 (pdf).

Paton, N.W., Automation Everywhere: Autonomics and Data Management, Proc. 24th British National Conference on Databases (BNCOD), R. Cooper and J, Kennedy (eds), Springer, 3-12, 2007 (pdf).

Paton, N.W., Jones, A.R., Garwood, C., Garwood, K., Oliver, S.G., Storing, Searching and Disseminating Experimental Proteomics Data, Introduction to Systems Biology, S. Choi (ed), Humana Press, 472-483, 2007.

Siyian, F., Griffiths, T. and Paton, N.W., GML for Representing Data from Spatio-Historical Databases: A Case Study, Transactions in GIS, 11(2), 233-253, 2007 (pdf).

Taylor C.F., Paton N.W., Lilley K.S., Binz P.-A., Julian R.K. Jr, Jones A.R., Zhu W., Apweiler R., Aebersold R., Deutsch E.W., Dunn M.J., Heck A.J.R., Leitner A., Macht M., Mann M., Martens L., Neubert T.A., Patterson S.D., Ping P., Seymour S.L., Souda P., Tsugita A., Vandekerckhove J., Vondriska T.W., Whitelegge J.P., Wilkins M.R., Xenarios I., Yates III J.R., Hermjakob H., The minimum information about a proteomics experiment (MIAPE), Nature Biotech, August;25(8), 887 - 893, 2007 (online).

Vizcaino, J.A., Martens, L., Hermjakob, H., Julian, R.K., Paton, N.W., The PSI formal document process and its implementation on the PSI website, Proteomics, Vol 7, 2355-2357, 2007.

2006

Antonioletti, M., Krause, A., Laws, S., Malaika, S., Paton, N.W., Pearson, D., Eisenberg, A. and Melton, J., The WS-DAI Family of Specifications for Web Service Data Access and Integration, ACM SIGMOD Record, Vol 35, No 1, 48-55, 2006 (online).

Belhajjame, K., Embury, S.M., Paton, N.W., On Characterising and Identifying Mismatches in Scientific Workflows. Proc. 3rd Intl. Wshp on Data Integration in the Life Sciences (DILS), Springer, 240-247, 2006 (pdf).

Belhajjame, K., Embury, S.M., Paton, N.W., Stevens, R. and Goble, C.A., Automatic Annotation of Web Services Based on Workflow Definitions, Proc. 5th Intl. Semantic Web Conference, Springer, 116-129, 2006 (pdf).

de F. Mendes Sampaio, S., Paton, N.W., Smith, J. and Watson, P., Measuring and Modelling the Performance of a Parallel ODMG Compliant Object Database Server, Concurrency and Computation: Practice and Experience, Vol 18, No 1, 63-109, 2006 (pdf).

Eurviriyanukul, K., Fernandes, A.A.A. and Paton, N.W.,  A Foundation for the Replacement of Pipelined Physical Join Operators in Adaptive Query Processing, Current Trends in Database Technology (EDBT Workshops), Springer, 589-600, 2006 (pdf).

Garwood, K., Garwood, C., Hedeler, C., Griffiths, T., Swainston, N., Oliver, S.G. and Paton, N.W., Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it, BMC Bioinformatics, 7:532, 2006 (open access).

Gounaris, A., Sakellariou, R., Paton, N.W. and Fernandes, A.A.A., A novel approach to resource scheduling for parallel query processing on computational grids, Distributed and Parallel Databases, Vol 19, No 2-3, 87-106, 2006 (pdf).

Hedeler, C., Paton, N.W., Behnke, J.M., Bradley, J.E. and Hampshire, M.G. and Else, K.J., A classification of tasks for the systematic study of  immune response using functional genomics data, Parasitology, Vol 132,  No 2, 157-167, 2006 (pdf).

Paton, N.W., Raman, V., Swart, G. and Narang, I., Autonomic Query Parallelization using Non-dedicated Computers: An Evaluation of Adaptivity Options, Proc. 3rd IEEE Intl. Conf. on Autonomic Computing, IEEE Press, 221-230, 2006 (pdf).

Shen, H., Nelson, G., Kennedy, S. Spiller, D., Griffiths, T., Paton, N.W., Oliver, S.G., White, M.R.H. and Kell, D.B., Automated tracking of gene expression in individual cells and cell compartments, Journal of The Royal Society: Interface, Vol 3, No 11, 717-858, 1996.

Zamboulis, L., Fan, H., Belhajjame, K., Siepen, J., Jones, A., Martin, N., Poulovassilis, A. Hubbard, S.J., Embury, S.M., Paton, N.W., Data Access and Integration in the ISPIDER Proteomics Grid. Proc. 3rd Intl. Wshp on Data Integration in the Life Sciences (DILS), 3-18, 2006 (pdf).

2005

Alpdemir, M.N., Mukherhee, A., Paton, N.W., Fernandes, A.A.A., Watson, P., Glover, K., Greenhalgh, C., Oinn, T.M. and Tipney, H.J., Contextualised Workflow Execution in myGrid. Proc. European Grid Conference, P.M.A. Sloot et al., (eds), Springer, 444-453, 2005.

Antonioletti, M., Atkinson, M., Baxter, R., Borley, A., Chue Hong, N.P., Collins, B., Hardman, N.,  Hulme, A.C., Knox, A., Jackson, M., Krause, A.,  Laws, S., Magowan, J., Paton, N.W., Pearson, D., Sugden, T., Watson, P. and Westhead, M., The design and implementation of Grid database services in OGSA-DAI, Concurrency and Computation: Practice and Experience, Vol 17, 357-376, 2005 (pdf).

Antonioletti, M., Krause, A. and Paton, N.W., An Outline of the Global  Grid Forum Data Access and Integration Service Specifications, 1st International Workshop on Data Management in Grids, Jean-Marc Pierson (ed), 71-84, Springer-Verlag, 2005 (pdf).

Atkinson M.P., DeRoure, D., Dunlop, A.N., Fox, G., Henderson, P., Hey, A,J.G., Paton, N.W., Newhouse, S., Parastatidis, S., Trefethen, A.E., Watson, P., Webber, J., Web Service Grids: an evolutionary approach. Concurrency - Practice and Experience, Vol 17, No 2-4, 377-389, 2005.

Datta R., de Schoolmeester M.L., Hedeler C., Paton N.W., Brass A.M., Else K.J., Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite, Infect. Immun., Vol 73, No 7, 4025-4033, 2005.

Garwood, K.L., Lord, P.W., Parkinson, H., Paton, N.W., Goble, C.A., Pedro Ontology Services: A Framework for Rapid Ontology Markup. Proc. 2nd European Semantic Web Conference, A. Gomez-Perez, J. Euzenat (eds), 578-591, Springer Verlag, 2005 (pdf).

Gounaris, A., Smith, J., Paton, N.W., Sakellariou, R., Fernandes, A.A.A. and Watson, P., Adapting to Changing Resource Performance in Grid Query Processing, 1st International Workshop on Data Management in Grids,  Jean-Marc Pierson (ed), 30-44, Springer-Verlag, 2005 (pdf).

Griffiths T., Fernandes, A.A.A., Paton N.W., Jeong, S-H., Djafri, N., Mason, K.T., Spatio-Temporal Databases in Practice: Directly Supporting Previously Developed Land Data Using Tripod, Proc. 21st Intl. Conf. on Data Engineering (ICDE), IEEE Press, 1135-1136, 2005 (pdf).

Jeong, S.-H., Paton, N.W., Fernandes, A.A.A. and Griffiths, T., An Experimental Performance Evaluation of Spatio-Temporal Join Strategies, Transactions in GIS, Vol 9, No 2, 129-156, 2005 (pdf).

Jones, A., Paton, N.W., An analysis of extensible modelling for functional genomics data, BMC Bioinformatics, Vol 6:235, 2005 (open access).

2004

Alpdemir, M.N. Mukherjee, A., Gounaris, A., Paton, N.W., Watson, P., Fernandes, A.A.A., Fitzgerald, D., OGSA-DQP: A Service for Distributed Querying on the Grid, Proc. 9th International Conference on Extending Database Technology (EDBT), 858-861, 2004 (pdf).

Atkinson, M., Chervenak, A.L., Kunszt, P., Narang, I., Paton, N.W., Pearson, D., Shoshani, A. and Watson, P., Data Access, Integration and Management, The Grid 2: Blueprint for a New Computing Infrashructure,  I. Foster and C. Kesselman (eds), Morgan-Kaufmann, 391-429, 2004.

Cornell, M., Paton, N.W. and Oliver, S.G., A critical and integrated view of the yeast interactome, Comparative and Functional Genomics, Vol 5, No 5, 382-402, 2004.

Garwood K., McLaughlin, T., Garwood, C., Joens, S., Morrison, N., Taylor, C.F., Carroll, K., Evans, C., Whetton, A.D., Hart, S., Stead, D., Yin, Z., Brown, A.J.P., Hesketh, A., Chater, K., Hansson, L., Mewissen, M., Ghazal, P., Howard, J., Lilley, K.S., Gaskell, S.J., Brass, A., Hubbard, S.J., Oliver, S.G., and Paton , N.W., PEDRo: A database for storing, searching and  disseminating experimental proteomics data, BMC Genomics, 5:68, 2004 (pdf).

Garwood, K.L., Taylor, C.F., Runte, K., Brass, A., Oliver, S.G. and Paton, N.W., Pedro: A Configurable Data Entry Tool for XML, Bioinformatics, Vol 20, No 15, 2463-2465, 2004 (online).

Gounaris, A., Paton, N.W., Fernandes, A.A.A. and Sakellariou, R., Self-Monitoring Query Execution for Adaptive Query Processing, Data and Knowledge Engineering, Vol 51, No 3, 325-348, 2004 (pdf).

Gounaris, T., Paton, N.W., Sakellariou, R., Fernandes, A.A.A., Adaptive Query Processing on the Grid: Opportunities and Challenges, Proc. 15th Intl. Wshp. on Database and Expert Systems Applications, IEEE Press, 506-510, 2004 (pdf).

Gounaris, A., Sakellariou, R., Paton, N.W., Fernandes, A.A.A., Resource Scheduling for Parallel Query Processing on Computational Grids. Proc 5th International Workshop on Grid Computing, IEEE Computer Society Press, 396-401, 2004 (pdf).

Griffiths, T., Fernandes, A.A.A., Paton, N.W. and Barr, R., The Tripod spatio-historical data model, Data and Knowledge Engineering, Vol 49, No 1, 23-65, 2004 (online).

Griffiths, T., Paton, N.W., Fernandes, A.A.A., Jeong, S.-H., Djafri, N., Language Bindings for Spatio-Temporal Database Programming in Tripod. Proc. 21st Annual British National Conference on Databases, M. Howard Williams, Lachlan M. MacKinnon (eds), Springer-Verlag, 216-233, 2004 (pdf).

Jenkins H., Hardy N., Beckmann M., Draper J., Smith A.R., Taylor J., Fiehn O., Goodacre R., Bino R.J., Hall R., Kopka J., Lane G.A., Lange B.M.,Liu J.R., Mendes P., Nikolau B.J., Oliver S.G., Paton N.W., Rhee S.,  Roessner-Tunali U., Saito K., Smedsgaard J., Sumner L.W., Wang T., Walsh S., Wurtele E.S., Kell D.B., A proposed framework for the description of plant metabolomics experiments and their results, Nature Biotech., Vol 22, No 12, 1601-1606, 2004.

Jeong, S.-H., Fernandes, A.A.A., Paton, N.W., Griffiths, T., A Generic Algorithmic Framework for Aggregation of Spatio-Temporal Data, Proc. 14th Int. Conf. on Scientific and Statistical Database Management (SSDBM), M. Hatzopoulos and Y. Manolopoulos (eds), 245-254, IEEE Press, 2004 (pdf).

Mabey, J.E., Anderson, M.J., Giles, P.F., Miller, C.J., Attwood, T.K., Paton, N.W., Bornberg-Bauer, E., Robson, G.D., Oliver, S.G. and Denning, D.W., CADRE: the Central Aspergillus Data REpository, Nucleic Acids Research, Vol 34, No 1, D401-405, 2004. (online).

Paton, N.W., Databases and the Grid: JDBC in WSDL, or Something Altogether Different? Semantics of a Networked World: Semantics for Grid Databases, First International IFIP Conference, ICSNW 2004, M. Bouzeghoub, et al., (eds), 1-13, 2004.

Pedrioli, P.G.A., Eng J.K., Hubley, R., Vogelzang, M., Deutsch, E.W.,Raught, B., Pratt, B., Nilsson, E., Angeletti, R.H., Apweiler, R., Cheung, K., Costello, C.E., Hermjakob, H., Huang, S., Julian Jr, R.K., Kapp, E., McComb, M.E., Oliver, S.G., Omenn, G., Paton, N.W., Simpson, R., Smith, R., Taylor, C.F., Zhu W., and Aebersold, R., A common open representation of mass spectrometry data and its application to proteomics research, NatureBiotech., Vol 22, No 11, 1459-1466, 2004.

Smith, J., Sampaio, S., Watson, P., and Paton, N.W., The Polar Parallel Object Database Server, Distributed and Parallel Databases, Vol 16, No 3, 275-319, 2004 (pdf).

2003

Ali, M.A., Fernandes, A.A.A., Paton, N.W., MOVIE: An Incremental Maintenance System for Materialized Object Views, Data and Knowledge Engineering, Vol 47, No 2, 131-166, 2003.

Alpdemir, M.N., Mukherjee, A., Paton, N.W., Watson, P., Fernandes, A.A.A., Gounaris, A., and Smith, J., Service-Based Distributed Querying on the Grid, 1st International Conference on Service Oriented Computing (ISOC), M.E. Orlowska, M.P. Weerawarana, M.P. Papazoglou and J. Yang (eds), 467-482, Springer-Verlag, 2003 (pdf).

Atkinson, M.P., Dialani, V., Guy, L., Narang, I., Paton, N.W., Pearson, D., Storey, T. and Watson, P., Grid Database Access and Integration: Requirements and Functionalities, Global Grid Forum Informational Document, GFD.13, 2003 (pdf).

Barclay, P.J., Griffiths, T., McKirdy, J., Kennedy, J., Cooper, R., Paton, N.W. and Gray, P., Teallach - A Flexible User-Interface Development Environment for Object Database Applications, J. Visual Languages and Computing, 14(1), 47-77, 2003.

Cornell, M., Paton, N.W., Hedeler, C., Kirby, P., Delneri, D., Hayes, A. and Oliver, S.G., GIMS: An Integrated Data Storage and Analysis Environment for Genomic and Functional Data, Yeast, Vol 20, No 15, 1291-1306, 2003. (online) da Silva, P.P. and Paton, N.W., Object Modeling of User Interfaces in UMLi, IEEE Software, Vol 20, No 4, 62-69, 2003 (pdf).

da Silva, P.P. and Paton, N.W., Improving UML Support for User Interface Design: A Metric Assessment of UMLi, Proc. ICSE Workshop on Bridging the Gaps Between Software Engineering and Human-Computer Interaction, R. Kazman, L. Bass and J. Bosc (eds), 76-83, 2003. (online)

Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., Alpdemir, N., Cawley, R., De Roure, D.,  Ferris, J., Gaizauskas, R., Glover, K., Greenhalgh, C., Li, P., Liu, X., Lord, P., Luck, M., Marvin, D., Oinn, T., Paton, N., Pettifer, S., Radenkovic, M.V., Roberts, A., Robinson, A., Rodden, T., Senger, M., Sharman, N., Stevens, R., Warboys, B., Wipat, A., Wroe, C., On the Use of Agents in BioInformatics Grid, Proc. 3rd International Symposium on Cluster Computing and the Grid, IEEE Press, 653-660, 2003.

Peim, M., Paton, N.W. and Franconi, E., Applying Functional Languages in Knowledge-Based Information Integration Systems, in Functional Approaches to Computing with Data, P.M.D. Gray, L. Kerschberg, P.J.H. King, A. Poulovassilis (eds), Springer-Verlag, 239-261, 2003.

Peim, M., Franconi, E., and Paton, N.W., Estimating the Quality of Answers when Querying over Description Logic Ontologies, Data and Knowledge Engineering, Vol 47, No 1, 105-129, 2003 (pdf).

Smith, J., Gounaris, A., Watson, P., Paton, N.W., Fernandes, A.A.A. and Sakellariou, R., Distributed Query Processing on the Grid, Intl. J. High Performance Computing Applications, Vol 17, No 4, 353-368, 2003 (Extended Version of Grid 2002 paper selected for publication in special issue). (pdf)

Stevens, R., Goble, C.A., Paton, N.W., Bechhofer, S., Ng, G., Baker, P. and Brass, A., Complex Query Formulation Over Diverse Information Sources in TAMBIS, in Bioinformatics: Managing Scientific Data, Z. Lacroix and T. Critchlow (eds), 189-224, Morgan-Kaufmann, 2003

Taylor, C.F., Paton, N.W., Garwood, K.L., Kirby, P.D., Stead, D.A., Yin, Z., Deutsch, E.W., Selway, L., Walker, J.,  Riba-Garcia, I., Mohammed, S., Deery, M.J.,  Howard, J.A.,  Dunkley, T.,  Aebersold, R.,  Kell, D.B., Lilley, K.S.,  Roepstorff, P., Yates III., J.R.,  Brass, A., Brown, A.J.P., Cash, P., Gaskell, S.J.,  Hubbard S.J. and Stephen G. Oliver, A systematic approach to modeling, capturing, and disseminating proteomics experimental data, Nature Biotechnology, 21(3), 247-254, 2003.

2002

Bornber-Bauer, E. and Paton, N.W., Conceptual Data Modelling for Bioinformatics, Briefings in Bioinformatics, Vol 3, No 1, 166-180, 2002.

Djafri, N., Fernandes, A.A.A., Paton, N.W. and Griffiths, T., Spatio-Temporal Evolution: Querying Patterns of Change in Spatio-Temporal Databases, Proc. 10th ACM Int. Symposium on Advances in Geographic Information Systems (ACM-GIS), A. Voisard, S-C. Chen (eds), ACM Press, 35-41, 2002. (pdf)

Gounaris, T., Paton, N.W., Fernandes, A.A.A. and Sakellariou, R., Adaptive Query Processing: A Survey, Proc. 19th British National Conference on Databases (BNCOD), B. Eaglestone, et al. (eds), Springer-Verlag, 11-25, 2002. (pdf)

Griffiths, T., Fernandes, A.A.A., Paton, N.W., Jeong, S.-H., Djafri, N., Mason, K., Huang, B., Worboys, M. Tripod: A Spatio-Historical Object Database System, Mining Spatio-Temporal Information Systems, The Kluwer International Series in Engineering and Computer Science: Volume 699, R. Ladner, K. Shaw, M. Abdelguerfi (eds), Kluwer Academic Publishers, 127-146, 2002.

Peim, M., Franconi, E. and Paton, N.W., Estimating Soundness and Completeness of Queries Over Description Logic Ontologies, Proc. 9th Int. Workshop on Knowledge Representation meets Databases (KRDB), 2002. (pdf)

Peim, M., Franconi, E., Paton, N.W. and Goble, C.A., Query Processing with Description Logics Over Object-Wrapped Databases, Proc. 14th Int. Conf. on Scientific and Statistical Database Management (SSDBM), J. Kennedy (ed), IEEE Press, 27-36, 2002. (pdf)

Sampaio, S., Paton, N.W., Smith, J. and Watson, P., Validated Cost Models for Parallel OQL Query Processing, Proc. 8th International Conference on Object-Oriented Information Systems (OOIS), Z. Bellahsene, D. Patel and C. Rolland(eds), Springer-Verlag, 60-75, 2002.

Smith, J., Gounaris, A., Watson, P., Paton, N.W., Fernandes, A.A.A. and Sakellariou, R., Distributed Query Processing on the Grid, 3rd Int. Workshop on Grid Computing, J.Sterbenz, O.Takada, C.Tschudin, B.Plattner (eds.), Springer-Verlag, 279-290, 2002. (pdf)

Smith, J., Watson, P., Sampaio, S.F.M. and Paton, N.W., Speeding Up Navigational Requests in a Parallel Object Database Server, Proc. 8th Int. Euro-Par Conference, B. Monien and R. Feldmann (eds), Springer-Verlag, 279-290, 2002.

2001

Ali, M.A., Paton, N.W. and Fernandes, A.A.A., An Experimental Performance Evaluation of Incremental Materialized View Maintenance in Object Databases, Proc. Data Warehousing and Knowledge Discovery (DaWaK), Y. Kambayashi, W. Winiwarter, M. Arikawa (eds), Springer-Verlag, 240-253, 2001. (pdf)

Cornell, M., Paton, N.W., Wu, S., Goble, C.A., Miller, C.J., Kirby, P., Eilbeck, K., Brass, A., Hayes, A. and Oliver, S.G., GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data, Proc. 2nd IEEE International Symposium on Bioinformatics and Bioengineering (BIBE), IEEE Press, 15-22, 2001. (pdf)

Goble, C.A., Stevens, R., Ng, G., Bechhofer, S., Paton, N.W., Baker, P.G. Peim, M. and Brass, A., Transparent access to multiple bioinformatics information sources, IBM Systems Journal, Vol 40, No 2, 534-551, 2001. (online)

Griffiths, T., Barclay, P.J., Paton, N.W., McKirdy, J., Kennedy, J., Gray, P.D., Cooper, R., Goble, C.A. and da Silva, P.P., Teallach: A Model-Based User Interface Development Environment for Object Databases, Interacting With Computers, Vol 14, No 1, 31-68, 2001. (pdf)

Griffiths, T., Fernandes, A.A.A., Djafri, N. and Paton, N.W., A Query Calculus for Spatio-Temporal Object Databases, Proc. 8th Int. Symposium on Temporal Reasoning and Representation (TIME), C. Bettini and A. Montanari, IEEE Press, 101-110, 2001. (pdf)

Griffiths, T., Fernandes, A.A.A., Paton, N.W., Mason, T. Huang, B., Worboys, M., Johnson, C. and Stell, J., Tripod: A Comprehensive System for the Management of Spatial and Aspatial Historical Objects, Proc. 9th ACM Int. Symposium on Advances in Geographic Information Systems (ACM-GIS), ACM Press, W.H. Aref (ed), 118-123, 2001. (pdf)

Griffiths, T., Fernandes, A.A.A., Paton, N.W., Mason, K.T., Huang, B., Worboys, M., Tripod: A Comprehensive Model for Spatial and Aspatial Historical Objects, Proc. 20th Int. Conference on Conceptual Modelling (ER), H.S. Kunii, S. Jajodia eds, Springer-Verlag, 84-102, 2001. (pdf)

Sampaio, S.F.M., Smith, J., Paton, N.W. and Watson, P., Experimenting with Object Navigation in Parallel Object Databases, Proc. 12th Int. Workshop on Databases and Expert Systems Applications (DEXA), Parallel and Distributed Databases Workshop, A. M. Tjoa and R. R. Wagner, 103-109, IEEE Press, 2001.

Sampaio, S.F.M., Smith, J., Paton, N.W. and Watson, P., An Experimental Performance Evaluation of Join Algorithms for Parallel Object Databases, Proc. 7th Int. Euro-Par Conference, Springer-Verlag, R. Sakellariou, et al. (eds), 280-290, 2001. (pdf)

da Silva, P.P. and Paton, N.W., User Interface Modelling with UML, Information Modelling and Knowledge Bases XII, H. Jaakkola, et al. (eds), ISO Press, 203-217, 2001.

da Silva, P.P., and Paton, N.W., A UML-Based Design Environment for Interactive Applications, Proc. of the 2nd Int. Workshop on User Interfaces to Data Intensive Systems (UIDIS), E. Kapetanios and H. Hinterberger (eds), 60-71, IEEE Computer Society, 2001. (pdf)

2000

Ali, M.A., Fernandes, A.A.A., and Paton, N.W., Incremental Maintenance of Materialized OQL Views, Proc. 3rd ACM International Workshop on Data Warehousing and OLAP, R. Missaoui and Il-Yeol Song (eds), 41-48, ACM Press, 2000. (pdf)

Murray, N.S., Paton, N.W., Goble, C.A., and Bryce, J., Kaleidoquery - a flow-based visual language and its evaluation, J. Visual Languages and Computing, Vol 11, No 2, 151-189, 2000. (pdf)

Paton, N.W., Goble, C.A. and Bechhofer, S., Knowledge Based Information Integration Systems, Information and Software Technology, Vol 42, No 5, 299-312, 2000.

Paton, N.W., Williams, M.H., Dietrich, K., Liew, O., Dinn, A. and Patrick, A., VESPA: A Benchmark For Vector Spatial Databases, in Proc. 17th British National Conference on Databases, B. Lings and K. Jeffery (eds), 81-101, Springer-Verlag, 2000. (pdf)

Paton, N.W., Fernandes, A.A.A. and Griffiths, T., Spatio-Temporal Databases: Contentions, Components and Consolidation, Int. Workshop on Advanced Spatial Databases (ASDM), 11th DEXA Workshop, A.M. Tjoa et al. (eds), IEEE Press, 851-855, 2000. (pdf)

Paton, N.W., Khan, S.A., Hayes, A., Moussouni, F., Brass, A., Eilbeck, K., Goble, C.A., Hubbard, S. and Oliver, S.G., Conceptual Modelling of Genomic Information, Bioinformatics, Vol 16, No 6, 548-558, 2000. (pdf)

Sampaio, P. and Paton, N.W., Query Processing in DOQL: A Deductive Database Language for the ODMG Model, Data and Knowledge Engineering, Vol 35, 1-38, 2000. (pdf)

da Silva, P.P., Griffiths, T. and Paton, N.W., Generating User Interface Code in a Model-Based User Interface Development Environment, Proc. Advanced Visual Interfaces, V. di Gesu, et al. (eds), ACM Press, 155-160, 2000. (pdf)

da Silva, P.P. and Paton, N.W., UMLi: The Unified Modeling Language for Interactive Applications, Proc. 3rd International Conference on UML, Springer-Verlag, A. Evans, et al. (eds), 117-132, 2000. (pdf)

Smith, J., Sampaio, S., Watson, P., and Paton, N.W., Polar: An Architecture for a Parallel ODMG Compliant Object Database, in Proc. 9th Int. Conf. on Information and Knowledge Management (CIKM), A. Agah, J. Callan and E. Rundensteiner (eds), 352-359, ACM Press, 2000. (pdf)

Stevens, R.D., Baker, P.G., Bechhofer, S., Ng, G., Jacoby, A., Paton, N.W., Goble, C.A. and Brass, A., TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources, Bioinformatics, Vol 16, No 2, 184-186, 2000.

1999

Baker, P.G., Goble G.A., Bechhofer, S., Paton, N.W., Stevens, R. and Brass, A., An Ontology for Bioinformatics Applications, Bioinformatics, Vol 15, No 6, 510-520, 1999. (pdf)

Barclay, P., Griffiths, T., McKirdy, J., Paton, N.W., Cooper, R., and Kennedy, J., The Teallach Tool: Using Models for Flexible User Interface Design, Computer-Aided Design of User Interfaces II (CADUI), J. Vanderdonckt and A. Puerta (eds), 139-158, Kluwer, 1999. (pdf)

Eilbeck, K., Brass, A., Paton, N.W., Hodgman, C., INTERACT: an object oriented protein-protein interaction database, Proc. 7th Int. Conf. on Intelligent Systems for Molecular Biology (ISMB), T. Lengauer, et al (eds), AAAI Press, 87-94, 1999.

Dinn, A., Paton, N.W. and Williams, M.H., Active Rule Analysis and Optimisation in the ROCK & ROLL Deductive Object-Oriented Database, Information Systems, Vol 24, No 4, 327-353, 1999 (pdf) .

Fernandes, A.A.A., Dinn, A., Paton, N.W., Williams, M.H. and Liew, O., Extending a Deductive Object-Oriented Database System with Spatial Data Handling Facilities, Information and Software Technology, Vol 41, 483-497, 1999. (pdf)

Griffiths, T.A., Barclay, P.J., McKirdy, J., Paton, N.W., Gray, P.D., Kennedy, J., Cooper, R., Goble, C.A., West, A. and Smyth, M., Teallach: A Model-Based User Interface Development Environment for Object Databases, Proc. User Interfaces to Data Intensive Systems (UIDIS), N.W. Paton and T. Griffiths (eds), IEEE Press, 86-96, 1999. (pdf)

Griffiths, T., Paton, N.W., Goble, C.A., and West, A.J., Task Modelling for Database Interface Development, Proc. 8th Int. Conf on Human-Computer Interaction (HCI International), Volume 1, 1033-1037, Lawrence Erlbaum Publishers, H-J Bullinger and J. Ziegler (eds), 1999.

Moussouni, F., Paton, N.W., Hayes, A., Oliver, S., Goble, C.A. and Brass, A., Database Challenges for Genome Information in the Post Sequencing Phase, Proc. 10th Database and Expert Systems Applications (DEXA), T. Bench-Capon et al. (eds), Springer-Verlag, 540-549, 1999.

Paton, N.W. (ed), Active Rules in Database Systems, Springer-Verlag, New York, 439 pages, ISBN 0-387-98529-8, 1999.

Paton, N.W. and Diaz, O., Active Database Systems, ACM Computing Surveys, Vol 31, No 1, 63-103, 1999 (pdf) .

Paton, N.W., Stevens, R., Baker, P., Goble, C.A., Bechhofer, S., and Brass, A., Query Processing in the TAMBIS Bioinformatics Source Integration System, Proc. 11th Int. Conf. on Scientific and Statistical Database Management (SSDBM), Z.M. Ozsoyoglo, et al. (eds), IEEE Press, 138-147, 1999. (pdf)

Sampaio, S.F.M., Paton, N.W., Watson, P., and Smith, J., A Parallel Algebra for Object Databases, Proc. 10th Int. Workshop on Databases and Expert Systems Applications (DEXA), Parallel and Distributed Databases Workshop, A.M. Toja, et al. (eds), IEEE Press, 56-60, 1999. (pdf)

1998

Baker, P.G., Brass, A., Bechhofer, S. Goble, C., Paton, N.W., Stevens, R., TAMBIS - Transparent Access to Multiple Biological Information Sources, Proc. 6th Int. Conf. on Intelligent Systems for Molecular Biology, 25-34, J. Glasgow, et al (eds), AAAI Press, 1998.

Diaz, O, Paton, N.W., and J. Iturrioz, Formalizing and Validating Behavioral Models Through the Event Calculus, Information Systems, Vol 23, No 3/4, 179-196, 1998. (Extended Version of CAiSE 97 paper selected for publication in special issue).

Griffiths, T., McKirdy, J., Forrester, G., Paton, N., Kennedy J., Barclay, P., Cooper, R., Goble, C. and Gray, P., Exploiting model-based techniques for user interfaces to databases, Visual Databases Systems (VDB 4 - IFIP TC2/WG2.6), Y. Ioannidis and W. Klas (eds), Chapman & Hall, 21-46, 1998.

Murray, N., Goble, C.A. and Paton, N.W., Kaleidoscape: a 3D environment for querying ODMG compliant databases, Visual Databases Systems (VDB 4 - IFIP TC2/WG2.6), Y. Ioannidis and W. Klas (eds), Chapman & Hall, 85-101, 1998.

Murray, N., Paton, N.W. and Goble, C.A., Kaleidoquery: A Visual Query Language for Object Databases, Proc. Advanced Visual Interfaces Conference (AVI), T. Catarci, et al. (eds), ACM Press, 247-257, 1998. (pdf)

Paton, N.W. and Sampaio, P.R., Extending the ODMG Architecture with a Deductive Object Query Language, Proc. 16th British National Conference on Databases, S. Embury, et al (eds), Springer-Verlag, 149-164, 1998.

Sampaio, P. and Paton, N.W., Deductive Queries in ODMG Databases: The DOQL Approach, Proc. Object-Oriented Information Systems (OOIS), Springer-Verlag, C. Rolland and G. Grosz (eds), 57-74, 1998. (pdf)

1997

Campin. J., Paton, N.W., and Williams, M.H., Specifying Active Database Systems in an Object-Oriented Framework, in Software Engineering and Knowledge Engineering, Vol 7, No 1, 101-123, 1997 (pdf).

Fernandes, A.A.A., Williams, M.H. and Paton, N.W., A Logic-Based Integration of Active and Deductive Databases, New Generation Computing, Vol 15, No 2, 205-244, 1997.

Diaz, O. and Paton, N.W., Stimuli and Business Policies as Modelling Constructs: their definition and validation through the event calculus, Proc. CAiSE, A. Olive and J. Pastor (eds), Springer-Verlag, 33-46, 1997. (pdf).

Dinn, A., Paton, N.W., Williams, M.H., Fernandes, A.A.A. and Barja, M.L., The Implementation of a Deductive Query Language Over an Object-Oriented Database, Journal of Systems Integration, Vol 7, 231-261, 1997. (Extended Version of DOOD '95 paper selected for publication in special issue)

Fernandes, A.A.A., Marja, M.L., Paton, N.W. and Williams, M.H., The formalisation of ROCK & ROLL: A deductive object-oriented database system, Information and Software Technology, Vol 39, No 6, 379-389, 1997.

Muller, V., Paton, N.W., Fernandes, A.A.A., Dinn, A. and Williams, M.H., Virtual Realms: An Efficient Implementation Strategy for Finite Resolution Spatial Data Types, Proc. 7th Int. Symposium on Spatial Data Handling (SDH), M. Kraak and M. Molenaar (eds), 697-710, Taylor & Francis, 1997. (pdf)

Sampaio, P. and Paton, N.W., Deductive Object-Oriented Database Systems: A Survey, Proc. 3rd. Int. Wshp. on Rules In Database Systems (RIDS), A. Geppert and M. Berndtsson (eds), Springer Verlag, 1-19, 1997. (pdf)

Williams, M.H. and Paton, N.W., From OO Through Deduction to Active Databases - ROCK, ROLL & RAP, Proc. 24th SOFSEM, 313-330, Springer-Verlag, 1997.

1996

Dinn, A., Paton, N.W., Williams, M.H. and Fernandes, A.A.A., An Active Rule Language for ROCK & ROLL, Proc. 14th BNCOD, Springer-Verlag, R. Morrison and J. Kennedy (eds), 36-55, 1996 (pdf).

Paton, N.W., K. Doan, O. Diaz and A. Jaime, Exploitation of Object-Oriented and Active Constructs in Database Interface Development, Proc. 3rd Int. Workshop on Interfaces to Database Systems, J. Kennedy and P.J. Barclay (eds), Springer-Verlag, Workshops In Computing Series, 1996.

Paton, N.W., Abdelmoty, A.I., and Williams, M.H., Programming Spatial Databases: A Deductive Object-Oriented Approach, Innovations in GIS 3, D. Parker (ed), Taylor & Francis, 69-78, 1996.

1995

Barja, M.L., Fernandes, A.A.A., Paton, N.W., Williams, M.H., Dinn, A., and Abdelmoty, A.I., Design and Implementation of ROCK & ROLL: A Deductive Object-Oriented Database System, Information Systems, Vol 20, No 3, 185-211, 1995. (pdf)

Campin. J., Paton, N.W., and Williams, M.H., A Structured Specification of an Active Database System, Information and Software Technology, Vol 37, No 1, 47-61, 1995.

Dinn, A, Paton, N.W., Williams, M.H., Fernandes, A.A.A. and Barja, M.L., The Implementation of a Deductive Query Language Over an Object-Oriented Database, Proc. 4th Intl. Conf. on Deductive Object-Oriented Databases, T.W. Ling and A.O. Mendelzon and L. Vieille (eds), Springer-Verlag, 143-160, 1995. (pdf)

Doan, D.K., Paton, N.W., Kilgour, A.C. and al-Qaimari, G., A Multi-paradigm Query Interface to an Object Oriented Database, Interacting With Computers, Vol. 7 No. 1, 25-47, 1995.

Doan, D.K., Paton, N.W. and Kilgour, A.C., Design and User Testing of a Multi-paradigm Interface to an Object-Oriented Database, ACM SIGMOD Record, Vol 24, No 3, 12-17, 1995.

Paton, N.W., Campin, J., Fernandes, A.A.A. and Williams, M.H., Formal Specification of Active Database Functionality: A Survey, Proc. 2nd Int. Workshop on Rules In Database Systems, T. Sellis (ed), Springer-Verlag, 21-35, 1995. (pdf)

Paton, N.W., Supporting Production Rules Using ECA Rules in an Object-Oriented Context, Information and Software Technology, Vol 37, No 12, 691-699, 1995 (pdf).

Paton, N.W., al-Qaimari, G., Doan, K. and Kilgour, A.C., Techniques for the Effective Evaluation of Database Interfaces, Proc. 2nd Int. Workshop on Interfaces to Database Systems, Springer-Verlag, P. Sawyer (ed), 343-357, 1995.