A C D E F G H I J K L M N O P Q R S T U V W

S

saveEvent(ProvenanceItem, SharedVocabulary) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

log raw event to file system

searchDataflowGraph(String, String, String, String, String, List<ProvenanceProcessor>) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

compute lineage queries using path projections

setAccount(ProvenanceAccount) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setActive(boolean) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setActivity(ActivityType[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessorType

Sets the activity value for this ProcessorType.

setActivity(int, ActivityType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessorType

setActName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setActualNestingLevel(int) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setANLset(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setAnnotationFile(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setAnswer(Map<QueryVar, Map<String, List<Dependencies>>>) - Method in class net.sf.taverna.t2.provenance.api.NativeAnswer

setCollection(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setCollId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setCollId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setCollIdRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setCollIDRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setCollQuery(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageSQLQuery

setCurrentAccount(ProvenanceAccount) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setCurrentArtifact(ProvenanceArtifact) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setCurrentProcess(ProvenanceProcess) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setCurrentRole(ProvenanceRole) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setDataDocument(DataDocumentType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.PortType

Sets the dataDocument value for this PortType.

setDataflowBlob(byte[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

A Blob object representing the dataflow

setDataflowID(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessType

Sets the dataflowID value for this ProcessType.

setEp(EventProcessor) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

setEventProcessor(EventProcessor) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setExecIDRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setExecutor(ExecutorService) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setExternalName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Workflow

setFacadeID(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessType

Sets the facadeID value for this ProcessType.

setFinished(boolean) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setFirstWorkflowStructure(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

setGenerateOPMGraph(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setGraph(ProvenanceContextFacade) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

setId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ActivityType

Sets the id value for this ActivityType.

setId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.DataDocumentType

Sets the id value for this DataDocumentType.

setId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.IterationType

Sets the id value for this IterationType.

setId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.LiteralType

Sets the id value for this LiteralType.

setId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessorType

Sets the id value for this ProcessorType.

setIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setIncludeDataValue(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setInput(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setInput(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setInput(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setInputdata(PortsSequenceType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.IterationType

Sets the inputdata value for this IterationType.

setInstanceID(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

setInvocationContext(InvocationContext) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setInvocationContext(InvocationContext) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setIteration(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setIteration(IterationType[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ActivityType

Sets the iteration value for this ActivityType.

setIteration(int, IterationType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ActivityType

setIteration(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setIteration(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setIteration(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setIterationVector(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setIterationVector(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setLiteral(LiteralType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.PortType

Sets the literal value for this PortType.

setModel(Model) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

setModel(Model) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

setName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.PortType

Sets the name value for this PortType.

setNativeAnswer(NativeAnswer) - Method in class net.sf.taverna.t2.provenance.api.QueryAnswer

setNestingLevel(int) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageSQLQuery

setOPMAnswer_AsRDF(String) - Method in class net.sf.taverna.t2.provenance.api.QueryAnswer

setOutputdata(PortsSequenceType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.IterationType

Sets the outputdata value for this IterationType.

setPa(ProvenanceAnalysis) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceAccess

setPAccess(ProvenanceAccess) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceQueryParser

setParentCollIDRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setParentCollIdRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setParentIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setParentWFname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Workflow

setPath(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setPFrom(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setPname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setPname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setPname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setPName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setPNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setPNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setPNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setPort(PortType[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.PortsSequenceType

Sets the port value for this PortsSequenceType.

setPort(int, PortType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.PortsSequenceType

setPortNameOrder(int) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setPositionInColl(int) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setPq(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceAccess

setPq(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

setPq(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

setPq(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setPq(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.WorkflowDataProcessor

setPrintResolvedValue(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.Dependencies

setPrintResolvedValue(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setProcessor(ProcessorType[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessType

Sets the processor value for this ProcessType.

setProcessor(int, ProcessorType) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.ProcessType

setProcessorName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setProvenance(Provenance) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setProvenanceAnalysis(ProvenanceAnalysis) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setProvenanceConnector(ProvenanceConnector) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceAccess

setPTo(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setPw(ProvenanceWriter) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

setPw(ProvenanceWriter) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

setPw(ProvenanceWriter) - Method in class net.sf.taverna.t2.provenance.lineageservice.WorkflowDataProcessor

setQuery(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setQuery(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

setQuery(ProvenanceQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

setReady(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setRecordArtifactValues(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setRecords(List<LineageQueryResultRecord>) - Method in class net.sf.taverna.t2.provenance.lineageservice.Dependencies

populates the bean with an entire list of LineageQueryResultRecord elements

setRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setReference(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.types.DataDocumentType

Sets the reference value for this DataDocumentType.

setReferenceService(ReferenceService) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setResolvedValue(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setResolvedValue(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setReturnOutputs(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setRunIDList(List<String>) - Method in class net.sf.taverna.t2.provenance.api.Query

setSaveEvents(String) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setSaveEvents(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

setSelectedProcessors(List<ProvenanceProcessor>) - Method in class net.sf.taverna.t2.provenance.api.Query

setSessionID(String) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

A unique identifier for this run of provenance, should correspond to the initial WorkflowProvenanceItem idenifier that gets sent through

setSinkPnameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setSinkVarNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setSourcePnameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setSourceVarNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setTargetVars(List<QueryVar>) - Method in class net.sf.taverna.t2.provenance.api.Query

setTimestamp(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

setTopLevel(boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setType(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setType(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setType(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setTypeNestingLevel(int) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setValFrom(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setValidPaths(Map<ProvenanceProcessor, List<List<String>>>) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

setValTo(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setValue(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setValue(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setValue(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setValueType(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setVarName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setVarNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setVarNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setVbQuery(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageSQLQuery

setVFrom(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setVname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setVname(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setVName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setVTo(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.DDRecord

setWfdp(WorkflowDataProcessor) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

setWfdp(WorkflowDataProcessor) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

setWfInstance(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setWfInstanceID(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

setWfInstanceId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setWfInstanceRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

setWfInstanceRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.NestedListNode

setWfInstanceRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setWfInstanceRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Var

setWfInstanceRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setWfName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

setWfName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.QueryVar

setWfName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Workflow

setWfNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProcBinding

setWfNameRef(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.VarBinding

setWorkflowExternalName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.ProvenanceProcessor

setWorkflowExternalName(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

setWorkflowIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.Collection

setWorkflowIdentifier(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

setWorkflowName(String) - Method in class net.sf.taverna.t2.provenance.api.Query

setWriter(ProvenanceWriter) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

simpleLineageQuery(String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

simplest possible pinpoint query.

StandAloneRDFProvenanceWriter - Class in net.sf.taverna.t2.provenance.lineageservice.rdf

StandAloneRDFProvenanceWriter(ProvenanceQuery) - Constructor for class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter