A C D E F G H I J K L M N O P Q R S T U V W

R

Rdf2Dot() - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

creates a dot file from the current OPMGraph.

RDFProvenanceWriter - Class in net.sf.taverna.t2.provenance.lineageservice.rdf

RDFProvenanceWriter() - Constructor for class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

ReadProvenanceConfiguration - Class in net.sf.taverna.t2.provenance.api

ReadProvenanceConfiguration(String) - Constructor for class net.sf.taverna.t2.provenance.api.ReadProvenanceConfiguration

reconcileLocalOutputs(String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

reconcile the top level outputs with the results from its immediate precedessors in the graph.
various cases have to be considered: predecessors may include records that are not in the output, while the output may include nested list structures that are not in the precedessors.

reconcileTopLevelOutputs() - Method in class net.sf.taverna.t2.provenance.lineageservice.EventProcessor

recordsToCollection(Dependencies) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

takes an ordered set of records for the same variable with iteration indexes and builds a collection out of it

removeRun(String) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceAccess

Removes all records that pertain to a specific run (but not the static specification of the workflow run)

removeWorkflow(String) - Method in class net.sf.taverna.t2.provenance.api.ProvenanceAccess

removes all records pertaining to the static structure of a workflow.

replaceCollectionRecord(NestedListNode, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

runCollectionQuery(LineageSQLQuery) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

runLineageQueries(List<LineageSQLQuery>, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

runLineageQuery(LineageSQLQuery, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

executes one of the lineage queries produced by the graph visit algorithm.

runVBQuery(LineageSQLQuery, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery