A C D E F G H I J K L M N O P Q R S T U V W

A

acceptRawProvenanceEvent(SharedVocabulary, ProvenanceItem) - Method in class net.sf.taverna.t2.provenance.lineageservice.Provenance

maps each incoming event to an insert query into the provenance store

ActivityType - Class in net.sf.taverna.t2.provenance.lineageservice.types

ActivityType() - Constructor for class net.sf.taverna.t2.provenance.lineageservice.types.ActivityType

ActivityType(IterationType[], String) - Constructor for class net.sf.taverna.t2.provenance.lineageservice.types.ActivityType

addArc(Var, Var, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

inserts one row into the ARC DB table -- OBSOLETE, see instead

addArc(String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addArc(Var, Var, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addArc(String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addArc(Var, Var, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addArc(String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addArtifact(String, Object) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

addArtifact(String) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

no actual value is recorded

addCollection(String, String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addCollection(String, String, String, String, String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addCollection(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

is this incomplete?? there is no tracking of parent collections...??

addData(String, String, Object) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addData(String, String, byte[]) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

adds (dataRef, data) pairs to the Data table (only for string data)

addLineageQueryResultRecord(String, String, String, String, String, String, String, String, String, String, boolean, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.Dependencies

adds a single record to the list of dependencies

addOrderByToQuery(String, List<String>, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

addProcess(String, String, String) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

addProcessor(String, String, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

insert new processor into the provenance DB

addProcessor(String, String, String, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

add a processor to the static portion of the DB with given name, type and wfnameRef scope

addProcessor(String, String, String, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addProcessor(String, String, String, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addProcessorBinding(ProcBinding) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addProcessorBinding(ProcBinding) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addProcessorBinding(ProcBinding) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addProvenanceItem(ProvenanceItem) - Method in class net.sf.taverna.t2.provenance.connector.ProvenanceConnector

Uses a ScheduledThreadPoolExecutor to process events in a Thread safe manner

addVar(Var) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addVarBinding(VarBinding) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addVarBinding(VarBinding) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

also fetches data values from the Data table of the relational provenance DB and adds it as a rdfs:comment to the RDF graph

addVarBinding(VarBinding, Object) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

also fetches data values from the Data table of the relational provenance DB and adds it as a rdfs:comment to the RDF graph

addVariables(List<Var>, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

add each Var as a row into the VAR DB table
note: no static var type available as part of the dataflow...

addVariables(List<Var>, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addVariables(List<Var>) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addWFId(String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addWFId(String, String, String, Blob) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addWFId(String, String, String, Blob) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addWFId(String, String, String, Blob) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addWFInstanceId(String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceWriter

addWFInstanceId(String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.RDFProvenanceWriter

addWFInstanceId(String, String) - Method in class net.sf.taverna.t2.provenance.lineageservice.rdf.StandAloneRDFProvenanceWriter

addWhereClauseToQuery(String, Map<String, String>, boolean) - Method in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceQuery

implements a set of query constraints of the form var = value into a WHERE clause

addWorkflowDataItem(ProvenanceItem) - Method in class net.sf.taverna.t2.provenance.lineageservice.WorkflowDataProcessor

adds the input ProvenanceItem event to the tree structure corresponding to the varname found in the item.

ALL_PATHS_KEYWORD - Static variable in class net.sf.taverna.t2.provenance.lineageservice.ProvenanceAnalysis

AnnotationsLoader - Class in net.sf.taverna.t2.provenance.lineageservice

AnnotationsLoader() - Constructor for class net.sf.taverna.t2.provenance.lineageservice.AnnotationsLoader

Arc - Class in net.sf.taverna.t2.provenance.lineageservice.utils

Arc() - Constructor for class net.sf.taverna.t2.provenance.lineageservice.utils.Arc

assertGeneratedBy(ProvenanceArtifact, ProvenanceProcess, ProvenanceRole, ProvenanceAccount, boolean) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

assertUsed(ProvenanceArtifact, ProvenanceProcess, ProvenanceRole, ProvenanceAccount, boolean) - Method in class net.sf.taverna.t2.provenance.opm.OPMManager

ATOM_TYPE - Static variable in class net.sf.taverna.t2.provenance.lineageservice.Dependencies