Description:
Retrieve information on Open Reading Frames that are represented by more than a given number of ESTs
from EST Libraries that are/not randomly sequenced and contain more than a given number of ESTs
Runtime:
Can take about 2-3 minutes to complete.
Input:
- Details
-
Genome |
The genome of interest |
Number of ESTs from the library |
Minimum number of ESTs that represent the Open Reading Frame from the
EST Library |
EST Library randomly sequenced |
Chose between true/false for libraries that are/not randomly sequenced |
EST Library with number of ESTs larger than |
Minimum number of ESTs in the library |
- Examples
-
Genome |
Number of ESTs from the library |
EST Library randomly sequenced |
EST Library with number of ESTs larger than |
Gibberella zeae |
30 |
true |
300 |
Magnaporthe grisea |
10 |
false |
500 |
Output:
- Description
-
General information on the Open Reading Frame |
- Details
-
Open Reading Frame ID |
Identifier of the Open Reading Frame |
Genome |
Genome which the Open Reading Frame belongs to |
# ESTs |
Number of ESTs that represent this Open Reading Frame |
# EST Unisequences |
Number of EST Unisequences that represent this Open Reading
Frame |
Locus Tag |
The Locus Tag of this Open Reading Frame |
Protein ID |
Identifier of the protein product of this Open Reading Frame |
Protein Description |
The description of the protein |