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Publications


Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW. 2007. e-Fungi: a data resource for comparative analysis of fungal genomes. BMC Genomics. 8(1):426 link

Cornell MJ, Alam I, Soanes DM, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG. 2007. Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi. Genome Res. Nov 5; [Epub ahead of print] link

I. Alam, M. Cornell, D.M. Soanes, C. Hedeler, H. M. Wong, M. Rattray, S.J. Hubbard, N.J. Talbot, S.G. Oliver and N.W. Paton. 2007. A Methodology for Comparative Functional Genomics. J. Integrative Bioinformatics. 4(3)69. link

Intikhab Alam, Simon J Hubbard, Stephen G Oliver and Magnus Rattray. 2007. A kingdom-specific protein domain HMM library for improved annotation of fungal genomes BMC Genomics 8:97. link

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wosten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H. 2007. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol. 25:221-31. link

Wang, Z-Y, Soanes, D. M., Kershaw, M.J., and Talbot, N.J. 2007. Functional analysis of lipid metabolism in Magnaporthe grisea reveals a requirement for peroxisomal fatty acid ß-Oxidation during appressorium-mediated plant infection. Molecular Plant-Microbe Interactions 20: 475-491.

G.K. Bhambra, Z.Y. Wang, D.M. Soanes, G.E. Wakley, N.J. Talbot. 2006. Peroxisomal carnitine acetyl transferase is required for elaboration of penetration hyphae during plant infection by Magnaporthe grisea. Mol. Microbiol. 61(1):46-60. link

K. Garwood, C. Garwood, C. Hedeler, T. Griffiths N., Swainston, S.G. Oliver and N.W. Paton. 2006. Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinformatics 7:532. link

B. Enjalbert, D.A. Smith, M.J. Cornell, I. Alam, S. Nicholls, A.J. Brown, and J. Quinn. 2006 Role of the Hog1 stress-activated protein kinase in the global transcriptional response to stress in the fungal pathogen Candida albicans. Mol Biol Cell. 17(2): 1018-32. link

D.M. Soanes and N.J. Talbot. 2006. Comparative genomic analysis of phytopathogenic fungi using expressed sequence tag (EST) collections. Molecular Plant Pathology 7: 61-70.

D.M. Soanes and N.J. Talbot. 2006 A bioinformatic tool for analysis of EST transcript abundance during infection-related development by Magnaporthe grisea. Molecular Plant Pathology 6: 61-70.

R.A. Dean, N.J. Talbot, D.J. Ebbole, D.M. Soanes, et al. 2005 The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434(7036): 980-986. link

M. Cornell, I. Alam, D.M. Soanes, H.M. Wong, M. Rattray, S. Hubbard, N.J. Talbot, B. Lings, D. Hoyle, S.G. Oliver and N.W. Paton. 2005 e-Fungi: An e-Science Infrastructure for Comparative Functional Genomics in Fungal Species. AHM2005 pdf


e-Fungi has been funded by the BBSRC Bioinformatics and E-science Programme II