Description:

Retrieve all the secretory or non-secretory proteins (as predicted using SignalP) for a given genome.

Runtime:

Can take about 2-3 minutes to retrieve all the secretory proteins for a given genome, but it can take up to 5 minutes to retrieve all non-secretory proteins.

Input:

Details

Genome	Name of the genome of interest; to retrieve a list of genomes from the database, the button "Existing Values..." can be used.
SignalP Prediction	Chose whether to retrieve secretory or non-secretory proteins.

Examples

Genome	SignalP Predition
Candida glabrata	secretory protein
Magnaporthe grisea	non-secretory protein
Phanerochaete chrysosporium	secretory protein

Output:

Description

Returns the result of the SignalP prediction for each protein along with the associated Sprob. Furthermore, the identifier of the MCL and OrthoMCL clusters in which the protein has been placed, if any, are also provided.

Details

Protein ID	Identifier of the protein
Genome	Genome provided as input
SignalP Prediction	SignalP prediction for the protein, i.e., indication whether it is predicted to be secretory or non-secretory
SProb	Sprob associated with the SignalP prediction
Pfam Annotation	List of Pfam A annotations of the protein.
PSort Prediction	Sub-cellular localisation of the protein as predicted by PSort.
Wolf-PSort Prediction	Sub-cellular localisation as predicted by Wolf-PSort.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any
Protein Sequence	Sequence of the protein