Description:
For all MCL clusters containing proteins of a given genome the number
of paralogs in the cluster are calculated.
Runtime:
Can take about 2-3 minutes to complete.
Input:
- Details
-
Genome |
Name of the genome of interest; to retrieve a list of genomes
from the database, the button "Existing Values..." can be used. |
- Examples
-
Genome |
Aspergillus nidulans |
Phytophthora sojae |
Schizosaccharomyces pombe |
Output:
- Description
-
For each number n of genomes in a cluster with n = 1,..,27 the
number of cluster with that number of genomes are calculated as
well as the relative frequency. |
- Details
-
Cluster ID |
Identifier of the cluster |
Genome |
Genome provided as input |
# Proteins |
Number or proteins in the cluster |
# Paralogs |
Number of paralogs in the cluster for the input genome |
# Genomes |
Number of genomes in the cluster |
Navigation |
Links that enable the retrieval of the genomes with proteins in
the cluster as well as the proteins in the cluster. Furthermore,
the query Mcl
Cluster analysis - Get the number of proteins for each genome in a given MCL cluster. can be executed which will take the chosen
cluster as input. |