Description:

Retrieves all proteins of a given genome that are part of a given pathway. If no genome is provided, all proteins in that particular pathway are retrieved. Please be patient, as this can increase the response time of the query considerably.

Runtime:

Takes about 1-2 minutes to complete.

Input:

Details

Genome	Name of the genome of interest. A list of all avaible genomes can be retrieved using the "Existing values..." feature.
Pathway	Identifier of Name of the pathway of interest. To retrieve a list of all available pathways, the "Existing values..." feature can be used.

Examples

Genome	Pathway
Saccharomyces cerevisiae	Synthesis and degradation of ketone bodies
Schizosaccharomyces pombe	Proteasome
Aspergillus fumigatus	Oxidative phosphorylation

Output:

Description

Returns information on the pathways a protein is part of along with the MCL and OrthoMCL clusters the protein has been placed into.

Details

Protein ID	Identifier of the protein.
Symbol	Symbol of the protein.
Genome	Genome the protein belongs to.
Pathway ID	Identifier of the pathway.
Pathway Name	Name of the pathway.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any.
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any.
Protein Sequence	Sequence of the protein.