Description:
Return all OrthoMCL clusters with a given percentage or more of the proteins
of a given genome.
Runtime:
Can take about 2-3 minutes to complete.
Input:
- Details
-
| Genome |
Name of the genome of interest; to retrieve a list of genomes
from the database, the button "Existing Values..." can be used. |
| Percentage |
Percentage of proteins of given genome in cluster |
- Examples
-
| Genome |
Percentage |
| Gibberella zeae |
85 |
| Rhizopus oryzae |
90 |
| Debaryomyces hansenii |
70 |
Output:
- Description
-
| Provides information about the clusters, i.e., how many
proteins are in the cluster and how many of those are from the
given genome. |
- Details
-
| Genome |
Genome that has been provided as input |
| Cluster ID |
The identifier of the cluster |
| # Genomes in cluster |
Number of genomes with proteins in the cluster |
| # Proteins in cluster |
Number of proteins in the cluster |
| # Proteins of genome in cluster |
Number of proteins of the given genome in the cluster |
| % Proteins from genome |
Percentage of the proteins in the cluster that are from the
given genome |
| Navigation |
Links that enable the retrieval of the genomes with proteins in
the cluster as well as the proteins in the cluster. Furthermore,
the query OrthoMcl
Cluster analysis - Get the number of proteins for each genome in a given OrthoMCL cluster. can be executed which will take the chosen
cluster as input. |
