Description:

Returns a summary of the OrthoMCL cluster analysis for a given genome.

Runtime:

Can take about 1-2 minutes to complete.

Input:

Details

Genome	Name of the genome of interest. To retrieve a list of genomes from the database, the button "Existing Values..." can be used.

Examples

Genome
Phytophthora sojae
Saccharomyces mikatae MIT
Ustilago maydis

Output:

Description

Provides a summary of the OrthoMCL cluster analysis for a given genome. The summary included the number of Open Reading Frames (ORF) that have been placed into clusters as well as the number of ORFs that are not part of a cluster.

Details

Genome	Genome that has been provided as input
# ORFs	Number of ORFs in the given genome
# clusters with ORFs	Number of clusters with ORFs of the given genome
# ORFs not in clusters	Number of ORFs of the given genome that have not been placed into clusters
% of ORFs not in clusters	Percentage of ORFs of the given genome that have not been placed into clusters
Navigation	Link that enable the execution of the query OrthoMcl Cluster analysis - Get OrthoMCL clusters that contain proteins of a given genome. using the given genome as input.