Description:
Return all MCL clusters with a given percentage or more of the proteins
of a given genome.
Runtime:
Can take about 2-3 minutes to complete.
Input:
- Details
-
Genome |
Name of the genome of interest; to retrieve a list of genomes
from the database, the button "Existing Values..." can be used. |
Percentage |
Percentage of proteins of given genome in cluster |
- Examples
-
Genome |
Percentage |
Candida glabrata |
50 |
Gibberella zeae |
60 |
Phanerochaete chrysosporium |
80 |
Output:
- Description
-
Provides information about the clusters, i.e., how many
proteins are in the cluster and how many of those are from the
given genome. |
- Details
-
Genome |
Genome that has been provided as input |
Cluster ID |
The identifier of the cluster |
# Genomes in cluster |
Number of genomes with proteins in the cluster |
# Proteins in cluster |
Number of proteins in the cluster |
# Proteins of genome in cluster |
Number of proteins of the given genome in the cluster |
% Proteins from genome |
Percentage of the proteins in the cluster that are from the
given genome |
Navigation |
Links that enable the retrieval of the genomes with proteins in
the cluster as well as the proteins in the cluster. Furthermore,
the query Mcl
Cluster analysis - Get the number of proteins for each genome in a given MCL cluster. can be executed which will take the chosen
cluster as input. |