Description:

Retrieves all proteins of a given genome with the same Pfam A annotation as a given protein. The given protein can be from a different genome as the genome provided as input. If no genome is provided, all proteins with that particular Pfam annotation are retrieved. Please be patient, as this can increase the response time of the query considerably.

Runtime:

Takes less than 1 minute to complete.

Input:

Details

Genome	Name of the genome of interest. A list of all avaible genomes can be retrieved using the "Existing values..." feature.
Protein ID	Name, identifier or symbol of a protein.

Examples

Genome	Protein ID
Aspergillus niger	MGG_10705.5
Saccharomyces mikatae WU	Smi23258MIT
Magnaporthe grisea	NCU07860

Output:

Description

Returns information on the proteins with their associated Pfam motifs and domains along with the MCL and OrthoMCL clusters they have been placed into.

Details

Protein ID	Identifier of the protein.
Symbol	Symbol of the protein.
Genome	Genome the protein belongs to.
Pfam Acc	Acc number of the Pfam A motif or domain.
Version	Version number of the motif or domain.
Pfam ID	Identifier of the Pfam motif or domain.
E Value	E value associated with the Pfam motif identification.
Bit Score	Bit score associated with the identification of the Pfam motif in the protein.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any.
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any.