Description:

Retrieves all genes of a given genome with the same Gene Ontology annotation as a given gene. The gene provided as input can be from a different genome as the genome provided as input. Please note that GO annotation is only available for S. cerevisiae, S. pombe and C. albicans. If no genome is provided, all genes with the same GO annotation as the given gene are retrieved. Please be patient, as this can increase the response time of the query considerably.

Runtime:

Can take about 1-2 minutes to retrieve all proteins of a given genome with the same GO annotation as the given protein. Retrieving all proteins with a given annotation can take up to 5 minutes depending on the number of proteins to retrieve (if no genome is specified).

Input:

Details

Genome	Name of the genome of interest. A list of all available genomes can be retrieved using the "Existing values..." feature.
Gene ID	Name, symbol or identifier of a gene.

Examples

Genome	Gene ID
Schizosaccharomyces pombe	CNS1
Candida albicans	YBR264C
Saccharomyces cerevisiae	vma2

Output:

Description

Returns information on the genes with the same functional annotation as the given gene along with the MCL and OrthoMCL clusters their associated proteins have been placed into.

Details

Gene ID	Identifier of the gene.
Symbol	Symbol of the gene.
Genome	Genome the protein belongs to.
GO ID	Identifier of the Gene Ontology term.
GO term	Name of the Gene Ontology term.
Ontology type	Ontology category of the annotation, i.e., Molecular Function, Biological Process or Cellular Component.
Evidence code	GO Evidence codes to indicate how the annotation has been obtained.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any.
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any.