Description:
Retrieves all the genes (of a given genome) which have been annotated with the
given Gene Ontology Term. A list of all available GO terms can
be obtained using the "Existing values..." feature. Please note that GO
annotation is only available for S. cerevisiae, S. pombe and C. albicans. If no genome is
provided, all genes with the given functional annotation are retrieved.
This can increase the response time of the query considerably, please be
patient.
Runtime:
Takes less than 1 minute to retrieve all proteins of a given genome with the
given GO annotation. Retrieving all proteins with a given annotation can take up
to 5 minutes depending on the number of proteins to retrieve (if no genome is specified).
Input:
- Details
-
| Genome |
Name of the genome of interest. A genome can also be chosen
from a list of available genomes using the "Existing values..." feature. If no
genome is provided, all genes with the given Gene Ontology annotation
are retrieved. |
| Gene Ontology Term |
Identifier or name of the GO term of interest. To retrieve a list
of available Gene Ontology terms, the "Existing values..." feature can
be used. |
- Examples
-
| Genome |
Gene Ontology Term |
| Schizosaccharomyces pombe |
ethanol metabolism |
| Saccharomyces cerevisiae |
enzyme inhibitor activity |
| Candida albicans |
entry into host |
Output:
- Description
-
| Returns information on the genes with the given functional annotation along
with the MCL and OrthoMCL clusters their associated proteins have been placed into. |
- Details
-
| Gene ID |
Identifier of the gene. |
| Symbol |
Symbol of the gene. |
| Genome |
Genome the protein belongs to. |
| GO ID |
Identifier of the Gene Ontology term. |
| GO term |
Name of the Gene Ontology term. |
| Ontology type |
Ontology category of the annotation, i.e., Molecular Function,
Biological Process or Cellular Component. |
| Evidence code |
GO Evidence codes to indicate how the annotation has been obtained. |
| MCL Cluster ID |
Identifier of the MCL cluster the protein has been placed in, if any. |
| OrthoMCL Cluster ID |
Identifier of the OrthoMCL cluster the protein has been placed in, if any. |
