Description:

Retrieves all proteins of a given genome with the same sub-cellular localisation predicted by PSort as a given protein. The protein can be from a different genome than the genome provided.

Runtime:

Can take about 1-2 minutes to retrieve the proteins of a given genome with the same sub-cellular localisation as a given protein.

Input:

Details

Genome	Name of the genome of interest. A list of all avaible genomes can be retrieved using the "Existing values..." feature.
Protein ID	Name, identifier or symbol of a protein.

Examples

Genome	Protein ID
Aspergillus niger	CIMG_00949
Candida glabrata	MGG_00010.5
Eremothecium gossypii	NCU08076

Output:

Description

PSort and Wolf-PSort predictions for protein with the same sub-cellular localisation as a given protein, including the scores associated with each prediction. Furthermore, the sequence of the protein is returned as well as the identifier of the MCL and OrthoMCL clusters it can be found, if it has been placed into a cluster.

Details

Protein ID	Identifier of the protein.
Genome	Genome the protein belongs to.
PSort Prediction	Sub-cellular localisation of the protein as predicted by PSort.
k	Score k associated with the PSort prediction.
Wolf-PSort Prediction	Sub-cellular localisation as predicted by Wolf-PSort.
Score	Score associated with the Wolf-PSort prediction.
Pfam Annotation	List of Pfam A annotations of the protein.
SignalP Prediction	SignalP prediction for the protein.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any.
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any.
Protein Sequence	Sequence of the protein.