Description:

Retrieves all proteins of a given genome with a given sub-cellular localisation as predicted by PSort.

Runtime:

Can take about 1-2 minutes to retrieve the proteins of a given genome with the given sub-cellular localisation.

Input:

Details

Genome	Name of the genome of interest. A list of all avaible genomes can be retrieved using the "Existing values..." feature.
PSort prediction	Name of the PSort sub-cellular localisation of interest. A list of all avaible localisations can be retrieved using the "Existing values..." feature.

Examples

Genome	PSort Prediction
Rhizopus oryzae	vesicles of secretory system
Neurospora crassa	Golgi
Saccharomyces kluyveri	cytoplasmic

Output:

Description

PSort and Wolf-PSort predictions for protein with the sub-cellular localisation of interest, including the scores associated with each prediction. Furthermore, the sequence of the protein is returned as well as the identifier of the MCL and OrthoMCL clusters it can be found, if it has been placed into a cluster.

Details

Protein ID	Identifier of the protein.
Genome	Genome the protein belongs to.
PSort Prediction	Sub-cellular localisation of the protein as predicted by PSort.
k	Score k associated with the PSort prediction.
Wolf-PSort Prediction	Sub-cellular localisation as predicted by Wolf-PSort.
Score	Score associated with the Wolf-PSort prediction.
Pfam Annotation	List of Pfam A annotations of the protein.
SignalP Prediction	SignalP prediction for the protein.
MCL Cluster ID	Identifier of the MCL cluster the protein has been placed in, if any.
OrthoMCL Cluster ID	Identifier of the OrthoMCL cluster the protein has been placed in, if any.
Protein Sequence	Sequence of the protein.