Publications

The following publications are relevant to the TAMBIS project.

[1]	Robert Stevens, Carole Goble, Norman W. Paton, Sean Bechhofer, Gary Ng, Patricia Baker, and Andy Brass. Complex Query Formulation Over Diverse Information Sources in TAMBIS. In Zoe Lacroix and Terence Critchlow, editors, Bioinformatics: Managing Scientific Data. Morgan Kaufmann, May 2003. [ bib ]
[2]	M. Peim, E. Franconi, N.W. Paton, and C.A. Goble. Query Processing with Description Logic Ontologies Over Object-Wrapped Databases. In J. Kennedy, editor, Proc. 14th International Conference on Scientific and Statistical Database Management (SSDBM), pages 27-36. EEE Computer Society, 2002. [ bib ]
[3]	C.A. Goble, R. Stevens, G. Ng, S. Bechhofer, N.W. Paton, P.G. Baker, M. Peim, and A. Brass. Transparent Access to Multiple Bioinformatics Information Sources. IBM Systems Journal Special issue on deep computing for the life sciences, 40(2):532 - 552, 2001. [ bib \| .pdf ]
[4]	R. Stevens, C.A. Goble, and S. Bechhofer. Ontology-based Knowledge Representation for Bioinformatics. Briefings in Bioinformatics, 1(4):398-416, November 2000. [ bib \| .pdf ]
[5]	R.D. Stevens, C.A. Goble, P. Baker, and A. Brass. A Classification of Tasks in Bioinformatics. Bioinformatics, 17(2):180-188, 2001. [ bib \| .pdf ]
[6]	R. Stevens and C. Miller. Wrapping and Interoperating Bioinformatics Resources Using CORBA. Briefings in Bioinformatics, 1(1):9-21, 2000. [ bib \| .pdf ]
[7]	C.A. Goble, Norman W. Paton, and Andy Brass. TAMBIS Final Report to the BBSRC Bioinformatics Panel, 2000. [ bib \| www ]
[8]	R. Stevens, C.A. Goble, N.W. Paton, S. Bechhofer, G. Ng, P. Baker, and A. Brass. Complex Query Formulation Over Diverse Information Sources Using an Ontology. In E. Bornberg-Bauer, A. De Beuckelaer, U. Kummer, and U. Rost, editors, Workshop on Computation of Biochemical Pathways and Genetic Networks, pages 83-88. European Media Lab (EML), August 1999. [ bib \| .pdf ]
[9]	R. Stevens, P. Baker, S. Bechhofer, G. Ng, A. Jacoby, N.W. Paton, C.A. Goble, and A. Brass. TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Bioinformatics, 16(2):184-186, 2000. [ bib \| .ps ]
[10]	Sean Bechhofer, Robert Stevens, Gary Ng, Alex Jacoby, and Carole Goble. Guiding the User: An Ontology Driven Interface. In Norman W. Paton and Tony Griffiths, editors, Proc. User Interfaces to Data Intensive Systems (UIDIS99), pages 158-161. IEEE Press, September 1999. [ bib \| .pdf ]
[11]	N.W. Paton, R.D. Stevens, P.G. Baker, C.A. Goble, S. Bechhofer, and A. Brass. Query Processing in the TAMBIS Bioinformatics Source Integration System. In et al. Z.M. Ozsoyoglo, editor, Proc. 11th Int. Conf. on Scientific and Statistical Database Management (SSDBM), pages 138-147, Los Alamitos, California, July 1999. IEEE Press. [ bib \| .ps ]
[12]	P.G. Baker, C.A. Goble, S. Bechhofer, N.W. Paton, R. Stevens, and A Brass. An Ontology for Bioinformatics Applications. Bioinformatics, 15(6):510-520, 1999. [ bib \| http ] Keywords: tambis,ontology,stevens
[13]	P.G. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, and R. Stevens. TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. An Overview. In Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB'98), pages 25-34, Menlow Park, California, June 28-July 1 1998. AAAI Press. [ bib \| .pdf ] Keywords: tambis,ontology,stevens