tambis.bib

@INCOLLECTION{old-jdm,
  TITLE = {{Complex Query Formulation Over Diverse Information Sources in TAMBIS}},
  AUTHOR = {Robert Stevens and Carole Goble and Norman W. Paton and  Sean Bechhofer and Gary Ng and Patricia Baker  and Andy Brass},
  BOOKTITLE = {Bioinformatics: Managing Scientific Data},
  EDITOR = {Zoe Lacroix and Terence Critchlow},
  PUBLISHER = {Morgan Kaufmann},
  MONTH = {May},
  YEAR = 2003,
  ISBN = {1-55860-829-X},
  KEY = {ontology,stevens}
}


@INPROCEEDINGS{ssmdb02,
  AUTHOR = {M. Peim and  E. Franconi and N.W. Paton and C.A. Goble},
  TITLE = {{Query Processing with Description Logic Ontologies Over Object-Wrapped Databases}},
  EDITOR = {J. Kennedy},
  BOOKTITLE = {Proc. 14th International Conference on Scientific and  Statistical Database Management (SSDBM)},
  PUBLISHER = {EEE Computer Society},
  PAGES = {27-36},
  YEAR = { 2002}
}


@ARTICLE{goble01,
  TITLE = {{Transparent Access to Multiple Bioinformatics Information Sources}},
  AUTHOR = {Goble, C.A. and Stevens, R. and Ng, G. and Bechhofer,  S. and Paton, N.W. and Baker, P.G. and
Peim, M. and Brass, A.},
  JOURNAL = {IBM Systems Journal Special issue on deep computing for the life sciences},
  VOLUME = {40},
  NUMBER = {2},
  YEAR = {2001},
  PAGES = {532 -- 552},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/goble01.pdf}
}


@ARTICLE{briefings2,
  TITLE = {{Ontology-based Knowledge Representation for Bioinformatics}},
  AUTHOR = {Stevens, R. and Goble, C.A. and Bechhofer, S.},
  YEAR = {2000},
  JOURNAL = {Briefings in Bioinformatics},
  MONTH = {November},
  VOLUME = {1},
  NUMBER = {4},
  PAGES = {398--416},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/briefings-ontology.pdf}
}


@ARTICLE{bio-queries,
  TITLE = {{A Classification of Tasks in Bioinformatics}},
  AUTHOR = {Stevens, R.D. and Goble, C.A. and Baker, P. and Brass, A.},
  YEAR = {2001},
  JOURNAL = {Bioinformatics},
  VOLUME = {17},
  NUMBER = {2},
  PAGES = {180--188},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/bio-queries.pdf},
  KEY = {stevens,ontology}
}


@ARTICLE{briefings1,
  TITLE = {{Wrapping and Interoperating Bioinformatics Resources Using CORBA} },
  AUTHOR = {Stevens, R. and Miller, C.},
  YEAR = {2000},
  JOURNAL = {Briefings in Bioinformatics},
  VOLUME = {1},
  NUMBER = {1},
  PAGES = {9--21},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/briefings-corba.pdf}
}


@MISC{final-report,
  AUTHOR = {C.A. Goble and Norman W. Paton and Andy Brass},
  YEAR = {2000},
  TITLE = {{TAMBIS Final Report to the BBSRC Bioinformatics Panel}},
  URL = {papers/TAMBISReport formatted.doc}
}


@INPROCEEDINGS{eml99,
  TITLE = {{Complex Query Formulation Over Diverse Information Sources Using an Ontology}},
  AUTHOR = {Stevens, R. and Goble, C.A. and Paton, N.W. and Bechhofer, S. and Ng, G.
and Baker, P. and Brass, A.},
  BOOKTITLE = {Workshop on Computation of Biochemical Pathways and Genetic
Networks},
  EDITOR = {Bornberg-Bauer, E. and  {De Beuckelaer}, A. and Kummer, U.  and Rost, U.},
  YEAR = {1999},
  MONTH = {August},
  LOCATION = {European Media Lab, Heidelberg, Germany},
  PAGES = {83--88},
  PUBLISHER = {European Media Lab (EML)},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/eml99.pdf}
}


@ARTICLE{tambis_appnote,
  TITLE = {{TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources}},
  AUTHOR = {Stevens, R. and Baker, P. and Bechhofer, S. and Ng, G. and
 Jacoby, A. and Paton, N.W. and Goble, C.A. and Brass, A.},
  YEAR = {2000},
  JOURNAL = {Bioinformatics},
  VOLUME = {16},
  NUMBER = {2},
  PAGES = {184--186},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/application-note.ps}
}


@INPROCEEDINGS{uidis99,
  AUTHOR = {Sean Bechhofer and Robert Stevens and Gary Ng and Alex Jacoby and Carole Goble},
  TITLE = {{G}uiding the {U}ser: {A}n {O}ntology {D}riven {I}nterface},
  BOOKTITLE = {Proc. User Interfaces to Data Intensive Systems (UIDIS99)},
  PUBLISHER = {{IEEE} Press},
  LOCATION = {Edinburgh, UK},
  DAY = {5--6},
  MONTH = {September},
  YEAR = {1999},
  PAGES = {158--161},
  EDITOR = {Norman W. Paton and Tony Griffiths},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/uidis99.pdf}
}


@INPROCEEDINGS{paton99,
  TITLE = {{Q}uery {P}rocessing in the {TAMBIS} {B}ioinformatics {S}ource {I}ntegration {S}ystem},
  AUTHOR = {Paton, N.W. and Stevens, R.D. and Baker, P.G. and Goble, C.A.  and
    Bechhofer, S. and Brass, A.},
  YEAR = {1999},
  BOOKTITLE = {Proc. 11th Int. Conf.
on Scientific and Statistical Database Management ({SSDBM})},
  EDITOR = {Z.M. Ozsoyoglo, \emph{et al}.},
  PUBLISHER = {{IEEE} Press},
  ADDRESS = {Los Alamitos, California},
  LOCATION = {Cleveland},
  MONTH = {July},
  PAGES = {138--147},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/ssdb.ps}
}


@ARTICLE{baker99,
  AUTHOR = {Baker, P.G.  and Goble, C.A. and Bechhofer, S. and Paton, N.W.  and Stevens, R. and Brass, A},
  TITLE = {{A}n {O}ntology for {B}ioinformatics {A}pplications},
  YEAR = {1999},
  KEYWORDS = {tambis,ontology,stevens},
  JOURNAL = {Bioinformatics},
  VOLUME = {15},
  NUMBER = {6},
  PAGES = {510--520},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/bioinformatics-ontology99.doc},
  KEY = {stevens,ontology}
}


@INPROCEEDINGS{baker98,
  AUTHOR = {Baker, P.G. and Brass, A. and Bechhofer, S. and Goble, C. and Paton, N. and Stevens, R.},
  TITLE = {{TAMBIS}: {T}ransparent {A}ccess to {M}ultiple {B}ioinformatics {I}nformation {S}ources. {A}n {O}verview},
  BOOKTITLE = {{Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB'98)}},
  MONTH = {June 28-July 1},
  KEYWORDS = {tambis,ontology,stevens},
  PUBLISHER = {AAAI Press},
  ADDRESS = {Menlow Park, California},
  LOCATION = {Montreal, Canada},
  YEAR = {1998},
  PAGES = {25--34},
  URL = {http://www.cs.man.ac.uk/~stevensr/papers/baker98.pdf}
}