| 08:00 -- 08:45 | Registration |
| 08:45 | Introduction |
| 09:00 | BioLink Text Mining SIG Christian Blaschke |
| 09:30 | All of MEDLINE Indexed to the Gene Ontology John Cleary and Tony C. Smith |
| 10:00 | Interactions Between the Gene Ontology and a Domain Corpus
for a Biological Natural Language Processing Application Cornelia M. Verspoor, Cliff Joslyn, and George Papcun |
| 10:30 -- 11:00 | Morning Coffee |
| 11:00 | Using Ontologies for Text Analysis Lawrence Hunter and K. Bretonnel Cohen |
| 11:30 | Half Way Up The Ladder M.W. Wright, E.A. Bruford, M.J. Lush, R.C. Lovering, V.K. Khodiyar, C.C. Talbot Jr.2, H.M. Wain, and S. Povey |
| 12:00 | Large Scale Ontologies for Information Retrieval
Nick Tilford |
| 12:30 -- 13:30 | Luncheon |
| 13:30 | Application of Gene Ontology in Bio-data Warehouse
Shunliang Cao, Lei Qin, Wei Wang, Yangyong Zhu, and YiXue Li |
| 14:00 | BioPAX - Data Exchange Ontology for Biological Pathway
Databases Joanne Luciano from the BioPAX Group |
| 14:30 | Structural Classification in the Gene Ontology Cliff Joslyn, Susan Mniszewski, Andy Fulmer, and Gary Heaton |
| 15:00 -- 15:30 | Afternoon Tea |
| 15:30 | A Report on the Sequence Ontology Suzanna E. Lewis, Karen Eilbeck, Michael Ashburner, Judith Blake, Michele Clamp, Richard Durbin, Lincoln Stein, Colin Wiel, Mark Yandell, and Christopher J. Mungall |
| 16:00 | Ontologies for the Physiome Project Poul Nielsen, Matt Halstead, and Peter Hunter |
| 16:30 | Disease Ontology: Structuring Medical Billing Codes for
Medical Record Mining and Disease Gene Association Patricia A. Dyck and Rex L. Chisholm |
| 17:00 | Integration of Ontology Data onto the Rat Genome Database
(RGD) System Norberto B. de la Cruz, Simon Twigger, Jedidiah Mathis, and Peter J. Tonellato |
| 17:30 | Finished |