This page contains the template spreadsheets for defining CTO terms. The spreadsheets are split according to the the children of 'Cell by function' in the CTO, each file contains all the leaf nodes under that term. There are no duplicate terms in any of the files. Any leaf term that was not a child of a 'cell by function' can be found in the 'therest.txt' file. All of these files are tab seperated and should open directly in Excel. For more information about who was assigned to do each file see the ontogenesis wiki.
The demo ontology, including GO, PATO and RO can be found here. Unzip the folder and open CTO-experiment.owl, Protege 4 shoudl handle all the imports for you.