<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha" version="0.2" log="0">
  <s:workflowdescription lsid="urn:lsid:net.sf.taverna:wfDefinition:b9b27d64-63de-4fd0-8596-ed852639682d" author="Katy Wolstencroft" title="diseaseGO">This workflow takes an input of a OMIM disease identifier and produces associated ensembl ids along with Gene ontology information. The output is difficult to interpret in its current form. This workflow provides a demonstrator of the need to think about the presentation of results during workflow design</s:workflowdescription>
  <s:processor name="hsapiens_gene_ensembl">
    <s:description>Homo sapiens genes (NCBI36)</s:description>
    <s:defaults>
      <s:default name="hsapiens_gene_ensembl.mim_morbid_ac_filter">176200</s:default>
    </s:defaults>
    <s:biomart>
      <biomart:MartQuery xmlns:biomart="http://org.embl.ebi.escience/xscufl-biomart/0.1alpha">
        <biomart:MartService location="http://www.biomart.org/biomart/martservice" />
        <biomart:MartDataset displayName="Homo sapiens genes (NCBI36)" name="hsapiens_gene_ensembl" type="TableSet" initialBatchSize="200" maximumBatchSize="50000" visible="false" interface="default" modified="2007-04-05 16:44:40">
          <biomart:MartURLLocation database="ensembl_mart_44" default="1" displayName="ENSEMBL 44 GENES (SANGER)" host="www.biomart.org" includeDatasets="" martUser="" name="ensembl" path="/biomart/martservice" port="80" serverVirtualSchema="default" virtualSchema="default" visible="1" />
        </biomart:MartDataset>
        <biomart:Query virtualSchemaName="default" count="0" softwareVersion="0.5" requestId="taverna">
          <biomart:Dataset name="hsapiens_gene_ensembl">
            <biomart:Attribute name="ensembl_gene_id" />
            <biomart:Attribute name="go" />
            <biomart:Attribute name="evidence_code" />
            <biomart:Attribute name="go_description" />
            <biomart:Filter name="mim_morbid_ac" value="" list="true" />
          </biomart:Dataset>
        </biomart:Query>
      </biomart:MartQuery>
    </s:biomart>
  </s:processor>
  <s:link source="hsapiens_gene_ensembl:hsapiens_gene_ensembl.ensembl_gene_id" sink="ensembl_Id" />
  <s:link source="hsapiens_gene_ensembl:hsapiens_gene_ensembl.evidence_code" sink="GO_evidence" />
  <s:link source="hsapiens_gene_ensembl:hsapiens_gene_ensembl.go" sink="GOID" />
  <s:link source="hsapiens_gene_ensembl:hsapiens_gene_ensembl.go_description" sink="GO_description" />
  <s:sink name="GOID" />
  <s:sink name="GO_evidence" />
  <s:sink name="GO_description" />
  <s:sink name="ensembl_Id" />
</s:scufl>


