<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha" version="0.2" log="0">
  <s:workflowdescription lsid="urn:lsid:www.mygrid.org.uk:operation:E1YS1AUBYF11" author="Duncan Hull" title="Syntax translation with SeqRet">Demonstrates the syntax translator shim "SeqRet" being used to translate a DNA sequence from FASTA to EMBL format</s:workflowdescription>
  <s:processor name="input_sequence_format" boring="true">
    <s:stringconstant>fasta</s:stringconstant>
  </s:processor>
  <s:processor name="output_sequence_format" boring="true">
    <s:stringconstant>embl</s:stringconstant>
  </s:processor>
  <s:processor name="GI_number" boring="true">
    <s:stringconstant>18450186</s:stringconstant>
  </s:processor>
  <s:processor name="Get_Nucleotide_FASTA">
    <s:local>net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker</s:local>
  </s:processor>
  <s:processor name="SeqRet_shim">
    <s:description>Reads and writes (returns) sequences</s:description>
    <s:defaults>
      <s:default name="sequence_direct_data" />
    </s:defaults>
    <s:soaplabwsdl>http://www.ebi.ac.uk/soaplab/services/edit.seqret</s:soaplabwsdl>
  </s:processor>
  <s:link source="GI_number:value" sink="Get_Nucleotide_FASTA:id" />
  <s:link source="Get_Nucleotide_FASTA:outputText" sink="SeqRet_shim:sequence_direct_data" />
  <s:link source="SeqRet_shim:outseq" sink="result" />
  <s:link source="input_sequence_format:value" sink="SeqRet_shim:sformat" />
  <s:link source="output_sequence_format:value" sink="SeqRet_shim:osformat" />
  <s:sink name="result" />
</s:scufl>


