Shows four major classes of shim service in one workflow, Dereferencer ("GetFASTA_shim" and "GetGenBankXML_shim"), Mapper ("SRS_Links_shim"), Part Extractor ("Extract_SWISS_shim") and Syntax translator ("SeqRet_shim") /GBSet/GBSeq/GBSeq_locus net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker embl fasta embl AllText uniprot net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker 51315800 For cross-referencing between databanks http://phoebus.cs.man.ac.uk:1977/axis/services/linking.srslinks Reads and writes (returns) sequences http://www.ebi.ac.uk/soaplab/services/edit.seqret net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker /GBSet/GBSeq/GBSeq_references/GBReference/GBReference_xref/GBXref/GBXref_id http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl run_eSearch org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter PubMed