Antoon Goderis


Presentations

Composing Models of Computation in Kepler/PtolemyII Talk at Workshop for Workflow Systems in e-Science, 2007

Workflow discovery in e-science Talk at Int. Web Services Conference, 2006

Taverna workflow editor overview Talk at DART workshop, 2006

Some do's and don'ts from my PhD Talk at CS700 Research Methods module, University of Manchester, 2006

Seven bottlenecks to workflow re-use and repurposing Talk at Int. Semantic Web Conference, 2005

Publications

PhD thesis

Antoon Goderis. Workflow Re-use and Discovery in Bioinformatics. PhD Thesis, School of Computer Science, The University of Manchester, 2008.

Book chapters

Antoon Goderis, Peter Li and Carole Goble. Scientific workflow discovery : the problem and a graph-matching solution. Invited to: Web Services Research for Emerging Applications: Discoveries and Trends (Advances in Web Services Research series)

Carole Goble, Katy Wolstencroft, Antoon Goderis, Duncan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Daniele Turi, Robert Stevens, Tom Oinn and David De Roure. Knowledge Discovery for Biology with Taverna: Producing and Consuming Semantics in the Web of Science. In: Baker and Cheung (Eds.) Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, 2007 [Springer]

Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi and Jun Zhao. Taverna/myGrid: Aligning a workflow system with the life sciences community. In: Taylor, Deelman, Gannon, Shields (Eds.) Workflows for e-Science. Scientific workflows for Grids. Springer, 2007 [Springer]

Journal papers

Antoon Goderis, Paul Fisher, Andrew Gibson, Franck Tanoh, Katy Wolstencroft, David De Roure and Carole Goble. Benchmarking Workflow Discovery: A Case Study From Bioinformatics. Accepted for publication in Concurrency and Computation: Practice and Experience. [EPrints]

Antoon Goderis, Christopher Brooks, Ilkay Altintas, Edward A. Lee and Carole Goble. Heterogeneous composition of models of computation. Future Generation Computer Systems (FGCS), Volume 25, Issue 5, May 2009, Pages 552-560 [Elsevier]

Antoon Goderis, Peter Li and Carole Goble. Workflow discovery: requirements from escience and a graph-based solution. International Journal of Web Services Research (JWSR), Volume 5, number 4, October-December 2008 [IGI Global]

Chris Wroe, Carole Goble, Antoon Goderis, Phillip Lord, Simon Miles, Juri Papay, Pinar Alper and Luc Moreau. Recycling workflows and services through discovery and reuse. Concurrency and Computation: Practice and Experience, Special Issue: Selected Papers from the 2004 U.K. e-Science All Hands Meeting (AHM 2004) [Wiley] [.pdf] [.bib]

Tom Oinn et al. Taverna: Lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice & Experience, Special Issue: Scientific Workflows. 18(10): 1067-1100 (2006) [Wiley] [.pdf] [.bib]

Frank Goethals, Antoon Goderis and Jacques Vandenbulcke. Via web-services en semantiek naar flexibele integratie, CBL Beleidsinformatica Tijdschrift (2002) Vol 28, No 2. [KU Leuven] [.pdf]

Conference papers

Dave De Roure, Carole Goble, Jiten Bhagat, Don Cruickshank, Antoon Goderis, Danius Michaelides and Dave Newman. myExperiment: Defining the Social Virtual Research Environment. Proc. of the 4th IEEE Int. Conference on e-Science, Indianapolis, USA, 7-12 December 2008 [Springer] [EPrints]

Antoon Goderis, Peter Li and Carole Goble. Workflow discovery: the problem, a case study from escience and a graph-based solution. Proc. of the 4th IEEE Int. Conference on Web Services (ICWS 2006), Chicago, USA, 12-22 September 2006 [IEEE] [.pdf] [.bib]

Antoon Goderis, Ulrike Sattler, Phillip Lord and Carole Goble. Seven bottlenecks to workflow reuse and repurposing. Proc. of the 4th Int. Semantic Web Conference, Galway, Ireland, 6-10 November 2005 [Springer] [.pdf] [.bib]

Workshop papers

Antoon Goderis, Christopher Brooks, Ilkay Altintas, Edward A. Lee and Carole Goble. Composing Different Models of Computation in Kepler and Ptolemy II Proc. of the 2nd Int. Workshop on Workflow Systems in e-Science (WSES 07) in conjunction with the Int. Conference on Computational Science (ICCS) 2007, Beijing, China, May 27-30, 2007 [Springer] [.pdf]

Antoon Goderis, Ulrike Sattler and Carole Goble. Applying DLs to workflow reuse and repurposing. International Description Logics workshop, Edinburgh, Scotland, 24-26 July 2005 [CEUR] [.pdf] [.bib]

Technical reports

Antoon Goderis, Christopher Brooks, Ilkay Altintas, Edward A. Lee and Carole Goble. Heterogeneous Composition of Models of Computation. UCB/EECS-2007-139, EECS Department, University of California, Berkeley, November 27, 2007

Position papers

Antoon Goderis, Yuwei Lin, Meik Poschen, Rob Procter, Carole Goble, David De Roure, Bill Flanagan, Ilya Sytchev and Lorrie LeJeune. The Open Scientist: fact or fiction? Pacific Symposium on Biocomputing, Open Science Workshop, Hawaii, 2009 [.pdf]

Posters

Antoon Goderis, Ilkay Altintas, Christopher Brooks. Nesting and Unnesting Models of Computation. Seventh Biennial Ptolemy Miniconference Program, Berkeley, CA, February, 2007.

Antoon Goderis. Seven bottlenecks to workflow re-use and repurposing. SET for BRITAIN event, House of Commons, London, 2006.

Google workflow search engine

Google Taverna bioservice search engine

Last updated : March 2009